Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e20
         (280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    91   3e-20
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    91   3e-20
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   0.49 
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   1.5  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   1.5  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   2.6  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    24   3.5  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    24   4.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   4.6  
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    23   6.1  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    23   6.1  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   8.0  

>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 91.1 bits (216), Expect = 3e-20
 Identities = 42/59 (71%), Positives = 49/59 (83%)
 Frame = +1

Query: 100 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQE 276
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQE 75


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 91.1 bits (216), Expect = 3e-20
 Identities = 42/59 (71%), Positives = 49/59 (83%)
 Frame = +1

Query: 100 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQE 276
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQE 75


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -3

Query: 188 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 78
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 83  FLTVLVRTRPMAEVVQRCF 27
           F T L R  P++E+V RCF
Sbjct: 413 FKTSLYRDHPVSEIVGRCF 431


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 206 PAILFLRGLVGMIAISSHILLFVSK 132
           P I  LRGLV   A   H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 160 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 252
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 64  GHDPWLKLYSAAFDRIK 14
           G D WLKL+ +AF + +
Sbjct: 146 GDDTWLKLFPSAFSKFE 162


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 175 PTKPLRNKIAGFATHLMRRLRHS 243
           P + +RNK    A H+M RL ++
Sbjct: 43  PHESVRNKTISIANHIMTRLNNN 65


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 100 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKI 201
           +++ +  LTL  +  + + E+IA  P K   NK+
Sbjct: 438 LQQIFIELTLKTEQEEYVREQIAWTPIKYFNNKV 471


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 134 LIQIKEYVKKSLSFLPSLLGIKLLD 208
           +I++K+ + KSL F   + G+KL+D
Sbjct: 16  MIRVKD-LDKSLKFYTEVFGMKLID 39


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 18  ILSKAALYNFSHGSCP 65
           + SK  LYN +H SCP
Sbjct: 806 VQSKMLLYNSNHISCP 821


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 166 AIIPTKPLRNKIAGFATH 219
           A+ P  PL++ +A F+TH
Sbjct: 43  ALKPLSPLKSLVADFSTH 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,020,025
Number of Sequences: 5004
Number of extensions: 16196
Number of successful extensions: 44
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)