Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e20
         (280 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                             95   9e-21
10_07_0174 + 13815478-13815903                                         94   1e-20
07_03_1712 + 28932328-28932502,28932583-28932902,28933405-28933950     25   6.5  
05_02_0072 - 6334613-6335215                                           25   6.5  
09_03_0034 + 11751965-11752010,11752138-11752205,11753142-117532...    25   8.6  
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019...    25   8.6  

>03_01_0066 - 537729-538163
          Length = 144

 Score = 94.7 bits (225), Expect = 9e-21
 Identities = 40/59 (67%), Positives = 53/59 (89%)
 Frame = +1

Query: 100 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQE 276
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++   VRGIS+KLQE
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQE 75


>10_07_0174 + 13815478-13815903
          Length = 141

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 40/59 (67%), Positives = 52/59 (88%)
 Frame = +1

Query: 100 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQE 276
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++   VRGIS+KLQE
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQE 75


>07_03_1712 + 28932328-28932502,28932583-28932902,28933405-28933950
          Length = 346

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 204 WICHTFNEASQTLASARNLYQTS 272
           WI H +  A+  LA+A N Y+ S
Sbjct: 132 WIMHEYRLAADPLAAAANTYKPS 154


>05_02_0072 - 6334613-6335215
          Length = 200

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 245 CECLRRLIKCVANPAILFLRGLVGMIAISSHILL 144
           C  L  L   +A+P   F+RG V    +  H+LL
Sbjct: 62  CATLNNLAPAMASPNFAFVRGDVASADLVLHLLL 95


>09_03_0034 +
           11751965-11752010,11752138-11752205,11753142-11753252,
           11753626-11753712,11753800-11754008,11754653-11754926,
           11756595-11757079,11758367-11758484,11758584-11758700,
           11758779-11758925,11759061-11759135,11759198-11759266,
           11759914-11760024,11760183-11760267,11760404-11760501,
           11760628-11760720,11760806-11760880
          Length = 755

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 133 FDTNKRICEEIAIIPTKPLRN--KIAGFATHLMRRLRH 240
           F  N  IC+++ + P+K LR   ++   +  L  R+R+
Sbjct: 598 FVGNSMICDDVVVHPSKALRKLPRVQHLSAQLAARMRN 635


>02_02_0574 -
           11701359-11701460,11701469-11701570,11701725-11701922,
           11702090-11704052,11705312-11706126
          Length = 1059

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -3

Query: 266 LIEIPRTCECLRRLIKCVANPAILFLRGLVGMIAISSHILLFVSKS 129
           + E+P T   LRRL++ + + ++    G+  M  +    L+ +SKS
Sbjct: 631 ITELPSTVVHLRRLVRLLIDASVKLPDGIGKMECLQEISLVGISKS 676


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,066,773
Number of Sequences: 37544
Number of extensions: 86273
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)