Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e20
         (280 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)            26   4.1  
SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)                    26   5.4  
SB_24497| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_58416| Best HMM Match : MrpF_PhaF (HMM E-Value=0.24)                25   7.1  
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)                       25   7.1  
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)                       25   7.1  
SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)                    25   7.1  

>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 109 YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 198
           YY++LT D+D+ K    EI I+P+ P+  K
Sbjct: 14  YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42


>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 131 ILIQIKEYVKKSLSFLPSLLGIKLLDL 211
           +L  I+E  K  L+ LPSL+ +K LDL
Sbjct: 219 LLAWIQEKRKNGLAILPSLIRMKALDL 245


>SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)
          Length = 163

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 181 KPLRNKIAGFATHLMRRLRHSQVR 252
           K LR ++  FA+H  RRLR + +R
Sbjct: 56  KALRGRVGLFASHCERRLRRTALR 79


>SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)
          Length = 609

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 206 PAILFLRGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAA 84
           P +LF+    G I  +  ++LFV+ S   +V    +++F A
Sbjct: 48  PVVLFVASSDGGIVFNVPVVLFVASSDGGIVFNVLVVLFVA 88


>SB_24497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 124 TLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRG 255
           TL    N  +C E   + ++P+  ++     H+M R +H  +RG
Sbjct: 60  TLPPKKNIDMCPEFDAVTSQPVTAEVPRQTNHVMTRSQHRILRG 103


>SB_58416| Best HMM Match : MrpF_PhaF (HMM E-Value=0.24)
          Length = 421

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = -3

Query: 200 ILFLRGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFLTV 72
           +L L  L+ +IAI+S I++ ++  +V  +  FS+I  A+F+ +
Sbjct: 174 LLLLLPLI-VIAIASMIVIAIASINVIAIACFSVIATASFIVI 215


>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 2065

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 263 IEIPRTCECLRRLIKCVANPAILFLRGLVGMIAISSHILLF 141
           + +P T ECL  L++  A   +L  RG V  +       LF
Sbjct: 621 LAMPETLECLSGLLESSAGSVVLLERGDVEAVTRHDDFRLF 661


>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 2538

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 130  DFDTNKRICEEIAIIPTKPLRNKIAGFAT 216
            D DT K I EE+  +P +P   +   F+T
Sbjct: 1638 DADTKKAIPEEVVAVPQEPTCFRRVAFST 1666


>SB_4812| Best HMM Match : Sulfatase (HMM E-Value=0)
          Length = 1040

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 124 TLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQ 246
           TL FD      E   ++PTKP  N+I     H+ + ++H Q
Sbjct: 397 TLLFDLTADPSESNPLVPTKPHYNEI---MKHINKAIKHHQ 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,243,326
Number of Sequences: 59808
Number of extensions: 106386
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 16,821,457
effective HSP length: 69
effective length of database: 12,694,705
effective search space used: 291978215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)