Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e20
         (280 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...    96   3e-21
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    27   2.6  
Z73899-5|CAA98080.1|  372|Caenorhabditis elegans Hypothetical pr...    25   8.0  
U56964-4|AAB54030.1|  536|Caenorhabditis elegans Hypothetical pr...    25   8.0  
U56964-3|AAL65786.1|  522|Caenorhabditis elegans Hypothetical pr...    25   8.0  
U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine rec...    25   8.0  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 43/59 (72%), Positives = 50/59 (84%)
 Frame = +1

Query: 100 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQE 276
           IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+    VRGISIKLQE
Sbjct: 17  IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQE 75


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 204 WICHTFNEASQTLASARNLYQ 266
           W CH FN A   ++ A+ L Q
Sbjct: 150 WACHIFNNAKSAVSGAKALLQ 170


>Z73899-5|CAA98080.1|  372|Caenorhabditis elegans Hypothetical
           protein ZK829.7 protein.
          Length = 372

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 254 PRTCECLRRLIKCVANPAILFLRGLVGM 171
           PRT   + R +KC+A   +LF+ GL G+
Sbjct: 253 PRT---VTRSLKCLAEGGVLFVGGLSGL 277


>U56964-4|AAB54030.1|  536|Caenorhabditis elegans Hypothetical
           protein F52E4.1a protein.
          Length = 536

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +1

Query: 136 DTNKRICEEIAIIPTKPLRN 195
           +T K++CE++ ++ +K L+N
Sbjct: 507 ETRKKVCEDLNMLESKKLKN 526


>U56964-3|AAL65786.1|  522|Caenorhabditis elegans Hypothetical
           protein F52E4.1b protein.
          Length = 522

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +1

Query: 136 DTNKRICEEIAIIPTKPLRN 195
           +T K++CE++ ++ +K L+N
Sbjct: 493 ETRKKVCEDLNMLESKKLKN 512


>U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine
           receptor, class w protein71 protein.
          Length = 353

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 146 KEYVKKSLSFLPSLLGIKLLDLP 214
           KE +KK LSF P   G K +DLP
Sbjct: 166 KELIKKQLSFQP---GDKCIDLP 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,464,377
Number of Sequences: 27780
Number of extensions: 84328
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)