Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19e19
(381 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 2.3
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 4.0
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 25 4.0
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 25 5.3
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 5.3
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 25 5.3
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 25 5.3
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.3
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 24 9.3
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 24 9.3
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 24 9.3
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 2.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 267 PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 124
P+ M + S P+ VY+ + L C NAK + LV+ + EE+
Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 4.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 213 YDNKYYKNLGCLIK-NAKRKKHLVEHEQEEKQWDLLDNYMVAED 85
Y+ Y L L K + K+ K + +H+ + W LLD +D
Sbjct: 238 YEESNYTRLPKLSKKDLKKSKRVKKHDYGGEDWSLLDRKFHDDD 281
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.0 bits (52), Expect = 4.0
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = -1
Query: 174 KNAKRKKHLVEHEQEEKQW-DLLD-----NYMVAEDPFLGPGKNQ--KLTLFKEIRSVKP 19
KN + + +V H+ + K+W DL D N + D + +++ L++ I+ + P
Sbjct: 354 KNKAKVQKIVSHKNQRKRWFDLTDVDPYTNLQDSTDNDISESESEGGDLSMSPLIKGLVP 413
Query: 18 DTMKL 4
DT+ L
Sbjct: 414 DTLSL 418
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 5.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 248 IHTPPPSGVLTCTTINITKTW 186
I+ PP + ++TC+T + W
Sbjct: 300 INNPPSNNIVTCSTDGLVHIW 320
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 24.6 bits (51), Expect = 5.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 83 PF*DRAKTKNLPFLKKFAV*NPIP 12
P + +KT+N+P LKKF N P
Sbjct: 1119 PVTNYSKTRNMPSLKKFLTVNQDP 1142
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 24.6 bits (51), Expect = 5.3
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -1
Query: 243 YTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQ 133
Y PT R Y+ L+KN K HL + Q
Sbjct: 173 YNPTAAREAHGLGMYFLAYEALVKNTMAKHHLTDRSQ 209
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 24.6 bits (51), Expect = 5.3
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -1
Query: 159 KKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPDTMK 7
KKH ++ ++EEK + LD++ P ++ LT F + V P ++K
Sbjct: 120 KKHSLQLQEEEKSSESLDSH--THPPKRVRNEDDSLT-FSKTSPVSPSSLK 167
>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 24.6 bits (51), Expect = 5.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 237 GCMNNSAYL*VFLLQNCYENSKILIYLRDG 326
GC+N YL +L+ C +NSKILI G
Sbjct: 131 GCLNGR-YLSRYLML-CLQNSKILIVCETG 158
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 23.8 bits (49), Expect = 9.3
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +3
Query: 192 FCNIYCRTRKYARWWGCMNNSAYL*VFLLQNCYENSKILIYLRDGYYFH 338
FC C+ +Y G ++ L F+ + Y+N +L YFH
Sbjct: 128 FCIAICKCIEYLHSKGMVHGEIRLDSFIPISSYDNVYMLTVGSGASYFH 176
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 23.8 bits (49), Expect = 9.3
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = -2
Query: 254 RIIHTPPPSGVLTCTTINITKTW 186
+++ TP P+ + + INI++ W
Sbjct: 323 QLVRTPSPASLSSSELINISRDW 345
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 23.8 bits (49), Expect = 9.3
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 246 SYTPTIGRTYVY--DNKYYKNLGCLIKNAKR 160
SY +GRTY++ D++ KN L+ K+
Sbjct: 289 SYCSNVGRTYLFDPDSEQQKNYSFLVALQKK 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,628
Number of Sequences: 5004
Number of extensions: 34659
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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