Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e19
         (381 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)          33   0.059
SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)                   30   0.55 
SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)                   29   0.97 
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)           28   2.9  
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)                       28   2.9  
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)                       28   2.9  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   27   5.2  
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)                 26   9.0  
SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   9.0  
SB_25538| Best HMM Match : Kinesin (HMM E-Value=0)                     26   9.0  

>SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)
          Length = 735

 Score = 33.5 bits (73), Expect = 0.059
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -1

Query: 237 PTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAE 88
           PT  RT+  D+K   ++  L+K  K +   + +E E K+W  L NYM AE
Sbjct: 87  PTFARTFAVDSKVTPSVIALLKQFKWEIVAIIYE-EWKKWVQLKNYMKAE 135


>SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)
          Length = 373

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = -3

Query: 241 HPHHRAYLRVRQ*ILQKLGLSYQKRQAQEAPSRT*TRGEAMGSSRQLHGCRRSLFRTGQK 62
           H + R+Y    +   ++LG S   +  +   ++     ++  +S  + GC  SL   GQ 
Sbjct: 19  HRNTRSYRTKSRFSAKRLGKSRNIKNRKSVRTKL---QDSRNNSTAIFGCNMSLLNKGQS 75

Query: 61  PKT---YPF*RNS-QC-ETRY 14
           PK+   +PF R++ QC E+RY
Sbjct: 76  PKSRRVHPFARHAGQCAESRY 96


>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
          Length = 416

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 66  CPVLKRDLRQPCSCLEDPIASPLVHVRLGASCAWRF**DSPSFCNIYC 209
           CP + R +  PC  ++ P++ P  +V    S    +   + S C  YC
Sbjct: 71  CPYVNRTVSVPCPYVKRPVSVPCPYVNRAVSVPCPYVNRAVSVCQPYC 118


>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
          Length = 506

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 348 NDTNGNNNHLANK*VFYCFRNSFVIKKPI 262
           ND N NN    NK   +   NSF I  P+
Sbjct: 379 NDNNNNNKSSCNKRYTFLSNNSFTITSPL 407


>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 210 DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 100
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 210 DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 100
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 303 FYCFRNSFVIKKPINMPNYSYTP 235
           F CFRN+ ++K    +P +++ P
Sbjct: 123 FLCFRNTAILKSSCKLPVFNFRP 145


>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
          Length = 321

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 222 TYVYDNKYYKNLGCLI-KNAKRKKHLVEHEQEEKQWDLLDNYM 97
           TY  D  + ++   L  K  +  K L+E E +EK +  L+NYM
Sbjct: 100 TYELDTDFDRDAQALYEKKLQVNKELMEKEVDEKVYKGLNNYM 142


>SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +1

Query: 178 KTAQVFVIFIVVHVSTPDGGGV*IIRHIYRFFYYKTVTKTVKYLFICEMVI 330
           +  +VF +F+  ++S P GGG       Y FF ++   K +  L +  + +
Sbjct: 376 REVRVFGVFVPENLSKPTGGGG---NGTYTFFLFQPYQKVLAGLLVVALAV 423


>SB_25538| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 711

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -1

Query: 174 KNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSV 25
           K  K K  L+++EQE ++W   +N +  ++      +N+K  LF+ I+ +
Sbjct: 265 KTGKLKAALIKYEQELQRWRQGEN-VPPDEQTSNAKENRKSDLFESIQQL 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,225,333
Number of Sequences: 59808
Number of extensions: 239504
Number of successful extensions: 739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)