Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e19
         (381 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50680.1 68414.m05699 AP2 domain-containing transcription fac...    29   0.79 
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR...    28   1.8  
At1g51120.1 68414.m05747 AP2 domain-containing transcription fac...    27   4.2  
At4g23550.1 68417.m03393 WRKY family transcription factor contai...    26   7.4  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    26   9.7  
At4g13160.1 68417.m02048 expressed protein contains Pfam profile...    26   9.7  

>At1g50680.1 68414.m05699 AP2 domain-containing transcription
           factor, putative similar to RAV1 [Arabidopsis thaliana]
           GI:3868857
          Length = 337

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 279 QNCYENSKILIYLRDGYYFHLYR 347
           QNCY    +L  +RDG Y H +R
Sbjct: 96  QNCYTTETVLNMIRDGSYQHKFR 118


>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1231

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -1

Query: 195 KNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPD 16
           KNL   I+N++    ++     E  W L +   + E    G G N+KL +      +K D
Sbjct: 54  KNLFKRIENSEIALAVLSSRYTESHWCLQELVKMMECSMKGEGCNKKLLVIPIFYKLKID 113

Query: 15  TMK 7
           T+K
Sbjct: 114 TVK 116


>At1g51120.1 68414.m05747 AP2 domain-containing transcription
           factor, putative similar to DNA-binding protein RAV1
           GI:3868857 from [Arabidopsis thaliana]
          Length = 352

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 279 QNCYENSKILIYLRDGYYFHLYR 347
           Q CY    +L  +RDG Y H +R
Sbjct: 115 QECYTTEAVLNMIRDGSYQHKFR 137


>At4g23550.1 68417.m03393 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA binding domain
          Length = 304

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = -1

Query: 303 FYCFRNSFVIKKPINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 124
           FY F    ++   +++P  S           D+K  ++ GCL+ N  R  H+   E + K
Sbjct: 61  FYPFSTQTILTSSVSLPEDSKP-------FRDDKKQRSHGCLLSNGSRADHIRISESKSK 113

Query: 123 Q 121
           +
Sbjct: 114 K 114


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 10  HGIGFHTANFFKKGKFLVFARS*KGIFGNH 99
           +G G+H    FK GKF        G+FG H
Sbjct: 135 YGYGYHGHGKFKHGKFKHGKFGKHGMFGKH 164


>At4g13160.1 68417.m02048 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 282

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -1

Query: 273 KKPINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQE 130
           K  + M    Y   I   + YD +    L  ++   +R+KH +E E E
Sbjct: 160 KASLEMEGKQYERMIDEKFAYDEEEMNILKEILFKREREKHFLEKELE 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,535,142
Number of Sequences: 28952
Number of extensions: 169508
Number of successful extensions: 500
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)