Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e14
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   2.0  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    24   6.3  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    24   6.3  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    23   8.3  

>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 210 CAGPLYLLQKFCNIHLNSILHWHP 139
           C   LYL+  FCN    S ++ HP
Sbjct: 209 CLNGLYLISPFCNQQPLSFINRHP 232


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 195 YLLQKFCNIHLNSILHWHP 139
           + L+K  NI  N+++ WHP
Sbjct: 334 WYLKKEINIPQNALISWHP 352


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 440

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 79 VFSIIFPSATFFIIVDTTV 23
          +FSI+  SAT+ I +D+TV
Sbjct: 18 MFSIVIVSATYSISLDSTV 36


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 180 TFEANKVGQHTTYDVVGKRDYNKFDKLVKK 269
           T +   +   ++Y V G R+Y+ FD L  K
Sbjct: 339 TLQTQNMRFKSSYGVRGPRNYSSFDALPSK 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,132,802
Number of Sequences: 5004
Number of extensions: 17219
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)