Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e14
         (314 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0414 + 28778438-28778750,28779240-28779298,28779391-287795...    27   4.1  
06_01_1028 - 8022903-8023050,8023151-8023276,8023977-8024074,802...    25   9.4  

>02_05_0414 +
           28778438-28778750,28779240-28779298,28779391-28779522,
           28779612-28779752,28780213-28780269,28780841-28780981,
           28782037-28782230,28782347-28782413,28782593-28782726,
           28783023-28783089,28783381-28783443,28783848-28784086,
           28784176-28784305,28784384-28784476,28784726-28784929,
           28785116-28785400
          Length = 772

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 174 YKTFEANKVGQHTTYDVVGKRDYNKF-DKLVKKY*HVAINH 293
           Y++  +NK+GQ T+Y      D N   D +  KY  + + H
Sbjct: 479 YRSGTSNKIGQSTSYPSSSSEDENYIQDVMPSKYSSMKMGH 519


>06_01_1028 -
           8022903-8023050,8023151-8023276,8023977-8024074,
           8024873-8024958,8025095-8025365
          Length = 242

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 171 YYKTFEANKVGQHT-TYDVVGKRDYNKFDKLVKKY*HVAINHTTFQEYK 314
           Y K     K G  +  YD  G+    KF+++ KK+ H   +  T +E K
Sbjct: 131 YVKNIHKGKHGSDSGVYDANGRFVPEKFEEIFKKHAHTRPDALTDKELK 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,590,469
Number of Sequences: 37544
Number of extensions: 92675
Number of successful extensions: 236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)