Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e14
         (314 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)                   28   1.4  
SB_8000| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.2  
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 26   5.6  
SB_25488| Best HMM Match : Death (HMM E-Value=1.4e-12)                 26   7.4  
SB_48633| Best HMM Match : GT36_AF (HMM E-Value=3.8)                   25   9.8  

>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
          Length = 290

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = -1

Query: 254 VKFIVISLADHVVRSVLAHFICFKSFVI 171
           + F+V+++AD +V ++  +F CF+  ++
Sbjct: 168 LSFVVLAIADRIVSNIRYYFACFQELLM 195


>SB_8000| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 937

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 248 FIVISLADHVVRSVLAHFICFKSFVIFT*TQFCTG 144
           ++V+S+   V+   +  FIC   F +   + FCTG
Sbjct: 355 YVVVSVGAVVIVDCVCAFICLCRFSLLLPSLFCTG 389


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 312 CTLETSYD*SQHVNIFSPIC 253
           C L   Y+ SQH+N+FS  C
Sbjct: 12  CRLYGVYNISQHINVFSGTC 31


>SB_25488| Best HMM Match : Death (HMM E-Value=1.4e-12)
          Length = 387

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 296 RMIDRNMSIFFHQF---VKFIVISLADHVVRSVLAHFIC 189
           R+I RN    F +    ++F VI  +D++VR  L HF C
Sbjct: 154 RVISRNFPTSFARLFMRIRFEVIK-SDNIVRQTLFHFQC 191


>SB_48633| Best HMM Match : GT36_AF (HMM E-Value=3.8)
          Length = 571

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 309 TLETSYD*SQHVNIFSPIC 253
           T E  YD S H+ +F P+C
Sbjct: 170 THEPDYDRSLHLRVFRPVC 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,133,087
Number of Sequences: 59808
Number of extensions: 122735
Number of successful extensions: 299
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)