Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e14
         (314 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   3.6  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   3.6  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   3.6  
AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprote...    22   6.2  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 263 EKILTCCDQSY 295
           EK  TCCD+ Y
Sbjct: 220 EKFYTCCDEPY 230


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 263 EKILTCCDQSY 295
           EK  TCCD+ Y
Sbjct: 220 EKFYTCCDEPY 230


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 263 EKILTCCDQSY 295
           EK  TCCD+ Y
Sbjct: 216 EKFYTCCDEPY 226


>AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprotein
           protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 95  IFAFYCVFDNFSKRYFFHNCGYNCL 21
           IFA +     F KRY F   G N L
Sbjct: 69  IFAGFAFLMTFLKRYGFSASGLNLL 93


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 288,773
Number of Sequences: 2352
Number of extensions: 5451
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 20748816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)