Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e14
         (314 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane...    26   6.6  
Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z68217-3|CAA92466.2|  466|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical
           protein C08B11.4 protein.
          Length = 822

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 314 FVLLKRRMIDRNMSIFFHQFVKFIV 240
           F++ K    ++N S F H F+KFI+
Sbjct: 330 FIVSKAPQDEKNSSAFNHPFIKFIL 354


>AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane
           protein NRF-6 protein.
          Length = 822

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 314 FVLLKRRMIDRNMSIFFHQFVKFIV 240
           F++ K    ++N S F H F+KFI+
Sbjct: 330 FIVSKAPQDEKNSSAFNHPFIKFIL 354


>Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical
           protein ZK1067.4 protein.
          Length = 541

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 171 YYKTFEANKVGQHTTYDVVGKRDYNKFDKLVKKY*HV 281
           YY+   +++ G    YD  G RD +K    V+K+ HV
Sbjct: 155 YYERMNSHQAGSMFIYDTCGFRDISKSILEVEKF-HV 190


>Z68217-3|CAA92466.2|  466|Caenorhabditis elegans Hypothetical
           protein F58G6.4 protein.
          Length = 466

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 169 NITKLLKQIKWASTLRTTWSA 231
           NITK  ++ KW S LR  W A
Sbjct: 397 NITKRREKRKWMSGLRKKWRA 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,294,521
Number of Sequences: 27780
Number of extensions: 101175
Number of successful extensions: 283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)