Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e13
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    29   0.41 
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   6.7  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   8.9  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 444 VHGLSICQIMLYGYIVCFSYEFYYCYGFRMF 536
           VHGL  C ++LY Y  C S+ +YY Y +  F
Sbjct: 618 VHGL--CWVLLYYYQGCPSWTWYYPYHYAPF 646


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 223 TLWTAFKTTEAHEVVYEMKLFQA 291
           +L T   TTE HE  Y  KL +A
Sbjct: 383 SLTTGLSTTEGHETGYSRKLHEA 405


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 18  FVYVLHKIHKVIDRHKSEVSLCC 86
           ++  L K+HKV+  H S V++ C
Sbjct: 36  YISFLTKLHKVLQTHSSFVNIPC 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,676
Number of Sequences: 5004
Number of extensions: 51458
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)