Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e13
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3897| Best HMM Match : DUF1662 (HMM E-Value=4.4)                    32   0.43 
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   2.3  
SB_27038| Best HMM Match : DUF1634 (HMM E-Value=2.9)                   29   3.1  
SB_51613| Best HMM Match : DUF1662 (HMM E-Value=4.4)                   29   4.1  
SB_25084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_23572| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-22)                 28   5.4  
SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)             28   5.4  
SB_1234| Best HMM Match : RVT_1 (HMM E-Value=3.1e-08)                  28   5.4  
SB_57685| Best HMM Match : Pkinase_Tyr (HMM E-Value=7.9)               28   7.1  
SB_19325| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_14213| Best HMM Match : RVT_1 (HMM E-Value=1.4e-24)                 27   9.4  
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_3897| Best HMM Match : DUF1662 (HMM E-Value=4.4)
          Length = 300

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +1

Query: 64  KVKFPYAALSYINVTLCTYTAMLVGYMATFNEFEYLQYW-----FLLSFLMSVALNAPTL 228
           +V +PY+ L  ++++L   T  L    A     EY +YW     F +   +SV L A   
Sbjct: 204 RVLYPYSGLCKLDLSLAEVTRRLPSIKAVLQVPEYSEYWRTAECFAIRKGISVVLQASKE 263

Query: 229 WT 234
           WT
Sbjct: 264 WT 265


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 453 LSICQIMLYGYIVCFSYEFYYCY 521
           L  C    Y Y  C+ Y +YYCY
Sbjct: 467 LRYCYCYCYCYYYCYCYCYYYCY 489



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 462 CQIMLYGYIVCFSYEFYYCY 521
           C    Y Y  C+ Y +YYCY
Sbjct: 474 CYCYYYCYCYCYYYCYYYCY 493


>SB_27038| Best HMM Match : DUF1634 (HMM E-Value=2.9)
          Length = 310

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 484 ILFVSVMSFTIVMGLECLKTKLVDSSLMFNSFMCALYIMIATVWS 618
           ++F +V+     MG  C    L + S  F +    L + IAT W+
Sbjct: 55  VVFATVLMTFSAMGFNCFGQSLFEFSSSFTALGTLLQLAIATTWT 99


>SB_51613| Best HMM Match : DUF1662 (HMM E-Value=4.4)
          Length = 246

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 64  KVKFPYAALSYINVTLCTYTAMLVGYMATFNEFEYLQYW 180
           +V +PY+ L  ++++L   T  L    A     EY +YW
Sbjct: 204 RVLYPYSGLCKLDLSLAEVTRRLPSIKAVLQVPEYSEYW 242


>SB_25084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 254 ASVVLNA-VHKVGAFSATDIKNDNRNQYCKYSNSLNVAMYPTN 129
           A +V+N  +HK G  S   I+ D      KY    +VA+YPTN
Sbjct: 306 APIVINRELHKGGDRSCMHIELDITGSGIKYDAGDHVAVYPTN 348


>SB_23572| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-22)
          Length = 269

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +1

Query: 139 YMATFNEFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEV 264
           Y      F  L     LS ++SVA N   LWT F T   H V
Sbjct: 9   YQENLESFILLSVLSTLSGIVSVAGNFLVLWTIFHTKSLHVV 50


>SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)
          Length = 930

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 152 STNLNIYNTGFCCR 193
           S NLN Y+TG CCR
Sbjct: 373 SLNLNCYSTGICCR 386


>SB_1234| Best HMM Match : RVT_1 (HMM E-Value=3.1e-08)
          Length = 210

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 178 WFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNY 321
           W  + F+  +  N+P LW     T   EVV + +L  A    N ++ +
Sbjct: 127 WLFVLFINDLECNSPHLWKYVDDTTVSEVVLKGELSSAQGLVNDIIEW 174


>SB_57685| Best HMM Match : Pkinase_Tyr (HMM E-Value=7.9)
          Length = 104

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 363 KNKICTHLIVRKHHIIQQHVTKVHGLEQLHFVNYFMGFCGFER 235
           + +IC H +++  H+I+ +  +V   +Q  F+ Y  G   F+R
Sbjct: 60  RKEICIHRMLQDVHVIKFYAQRVENSKQYLFLEYSSGGELFDR 102


>SB_19325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 363 KNKICTHLIVRKHHIIQQHVTKVHGLEQLHFVNYFMGFCGFER 235
           + +IC H +++  H+I+ +  +V   +Q  F+ Y  G   F+R
Sbjct: 60  RKEICIHRMLQDVHVIKFYAQRVENSKQYLFLEYSSGGELFDR 102


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 52   STDTKVKFPYAALSYINVTLCTYTAML 132
            STD +V F + +L   N+T  TY A+L
Sbjct: 2250 STDARVDFKFNSLRPSNITTSTYAALL 2276


>SB_14213| Best HMM Match : RVT_1 (HMM E-Value=1.4e-24)
          Length = 811

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 363 KNKICTHLIVRKHHIIQQHVTKVHGLEQLHFVNY 262
           ++K+ T    R  +I ++ +  VHGLE+LH+  Y
Sbjct: 296 RSKLLTETERRYSNIEREMLAVVHGLEKLHYYAY 329


>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/48 (25%), Positives = 31/48 (64%)
 Frame = -3

Query: 530 SKPITIVKLITETNNITI*HDLAYR*SVYAPIVWPNRISNSRNIIKST 387
           +K ++ ++L ++ +N+T  ++L+ R ++ +PI++P  +  +  II  T
Sbjct: 116 NKYVSPIELSSQVDNLTSYNNLSNRLTITSPIIYPTALPITSPIIYPT 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,153,282
Number of Sequences: 59808
Number of extensions: 386023
Number of successful extensions: 1060
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)