Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19e13
(625 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel... 29 3.3
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel... 29 3.3
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel... 29 3.3
At2g30575.1 68415.m03725 glycosyl transferase family 8 protein c... 29 3.3
At4g14160.3 68417.m02185 transport protein, putative similar to ... 27 7.7
At4g14160.2 68417.m02186 transport protein, putative similar to ... 27 7.7
At4g14160.1 68417.m02184 transport protein, putative similar to ... 27 7.7
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc... 27 7.7
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi... 27 7.7
At1g17950.1 68414.m02221 myb family transcription factor (MYB52)... 27 7.7
>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 710
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 166 YLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNYV 324
YLQ WF++ FL + L +W +++ +V + QA+ F VL+ Y+
Sbjct: 180 YLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSDV---LATKQALLFI-VLVQYI 228
>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 717
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 166 YLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNYV 324
YLQ WF++ FL + L +W +++ +V + QA+ F VL+ Y+
Sbjct: 187 YLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSDV---LATKQALLFI-VLVQYI 235
>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 717
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 166 YLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNYV 324
YLQ WF++ FL + L +W +++ +V + QA+ F VL+ Y+
Sbjct: 187 YLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSDV---LATKQALLFI-VLVQYI 235
>At2g30575.1 68415.m03725 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 610
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 244 TTEAHEVVYEMK-LFQAMYFSNVLLNYVVFSDNQMGTNFVFVNNLI 378
TTE + +E + L Q Y L +YVVFSDN + ++ V VN+ I
Sbjct: 297 TTEYFTLDHEKRQLLQQSYNDPDLYHYVVFSDNVLASS-VVVNSTI 341
>At4g14160.3 68417.m02185 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 620
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 590 KAHINELNIKLLSTSFVFKHSKPIT 516
+AH++EL +S FVFK +K +T
Sbjct: 177 QAHVHELGFSEMSKVFVFKGNKEVT 201
>At4g14160.2 68417.m02186 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 772
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 590 KAHINELNIKLLSTSFVFKHSKPIT 516
+AH++EL +S FVFK +K +T
Sbjct: 177 QAHVHELGFSEMSKVFVFKGNKEVT 201
>At4g14160.1 68417.m02184 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 621
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 590 KAHINELNIKLLSTSFVFKHSKPIT 516
+AH++EL +S FVFK +K +T
Sbjct: 177 QAHVHELGFSEMSKVFVFKGNKEVT 201
>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to SP|P87051
Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
(Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
Pfam profiles PF00160: peptidyl-prolyl cis-trans
isomerase cyclophilin-type, PF00400: WD domain G-beta
repeat
Length = 631
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 352 LYPFDCPKTPHNSTARY*STWLGTASFRKLLHGLL 248
LYP +CPKT N T + + F +++ G +
Sbjct: 491 LYPEECPKTVENFTTHCRNGYYDNHLFHRVIRGFM 525
>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 836
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 268 YEMKLFQAMYFSNVLLNYVV 327
YE++ A YF NVLLNY+V
Sbjct: 656 YELEEGAARYFVNVLLNYLV 675
>At1g17950.1 68414.m02221 myb family transcription factor (MYB52)
similar to myb-like protein GI:6979341 from [Oryza
sativa]
Length = 249
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 13 MGLFTCCTKYTRLSTDTKVKFPYAALSYIN 102
+G + C K RL+T T + FPY S+IN
Sbjct: 129 IGNYKDCDKERRLATTTAINFPY-QFSHIN 157
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,982,801
Number of Sequences: 28952
Number of extensions: 253046
Number of successful extensions: 554
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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