Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19e12
(309 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 4e-31
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 4e-31
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 129 4e-31
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 129 4e-31
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 104 1e-23
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 78 2e-15
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 58 2e-09
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 50 4e-07
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 37 0.004
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 37 0.004
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.005
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 34 0.027
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06) 33 0.036
SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.063
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 32 0.11
SB_11656| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.19
SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026) 31 0.25
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.33
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.58
SB_43701| Best HMM Match : ubiquitin (HMM E-Value=0.003) 29 0.58
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.77
SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.77
SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.77
SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32) 29 0.77
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19) 29 1.0
SB_1963| Best HMM Match : rve (HMM E-Value=0.022) 29 1.0
SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_33381| Best HMM Match : RVT_1 (HMM E-Value=0.025) 28 1.3
SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 1.8
SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.8
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 27 3.1
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_26957| Best HMM Match : PDZ (HMM E-Value=0) 27 4.1
SB_24392| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_20965| Best HMM Match : Fz (HMM E-Value=3.1) 26 7.2
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 26 7.2
SB_27889| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_8472| Best HMM Match : TatC (HMM E-Value=1.4) 25 9.5
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 129 bits (312), Expect = 4e-31
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 208 IQKESTLHMVLRLRGG 255
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 129 bits (312), Expect = 4e-31
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 208 IQKESTLHMVLRLRGG 255
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 129 bits (312), Expect = 4e-31
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 208 IQKESTLHMVLRLRGG 255
IQKESTLH+VLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 129 bits (312), Expect = 4e-31
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 208 IQKESTLHMVLRLRGG 255
IQKESTLH+VLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 129 bits (312), Expect = 4e-31
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 208 IQKESTLHMVLRLRGG 255
IQKESTLH+VLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 129 bits (312), Expect = 4e-31
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 208 IQKESTLHMVLRLRGG 255
IQKESTLH+VLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 129 bits (312), Expect = 4e-31
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 208 IQKESTLHMVLRLRGG 255
IQKESTLH+VLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456
Score = 129 bits (312), Expect = 4e-31
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 208 IQKESTLHMVLRLRGG 255
IQKESTLH+VLRLRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 129 bits (312), Expect = 4e-31
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 208 IQKESTLHMVLRLRGG 255
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 129 bits (312), Expect = 4e-31
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 208 IQKESTLHMVLRLRGG 255
IQKESTLH+VLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 129 bits (312), Expect = 4e-31
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 208 IQKESTLHMVLRLRGG 255
IQKESTLH+VLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 129 bits (312), Expect = 4e-31
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 208 IQKESTLHMVLRLRGG 255
IQKESTLH+VLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 129 bits (312), Expect = 4e-31
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 208 IQKESTLHMVLRLRGG 255
IQKESTLH+VLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 129 bits (312), Expect = 4e-31
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 208 IQKESTLHMVLRLRGG 255
IQKESTLH+VLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 64.9 bits (151), Expect = 1e-11
Identities = 30/71 (42%), Positives = 50/71 (70%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQI +K KT T + E ++TV +K+KI ++EG+P QRL++ ++L D++++ADYN
Sbjct: 77 MQISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYN 135
Query: 208 IQKESTLHMVL 240
I++ S LH+ L
Sbjct: 136 IKQGSILHLFL 146
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 104 bits (250), Expect = 1e-23
Identities = 46/63 (73%), Positives = 56/63 (88%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138
Query: 208 IQK 216
IQK
Sbjct: 139 IQK 141
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 77.8 bits (183), Expect = 2e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = +1
Query: 133 VPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 255
+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 42
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 57.6 bits (133), Expect = 2e-09
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +1
Query: 34 IFIKTLTGKTITAETE-PAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNI 210
I + TLTG+ I + P T+ ++K I K G P DQQRL+F G+ L D T I
Sbjct: 73 IAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGI 132
Query: 211 QKESTLHMVLRLRGG 255
+TLH+++RL GG
Sbjct: 133 FAGATLHLIVRLLGG 147
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 50.0 bits (114), Expect = 4e-07
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +1
Query: 19 SVKMQIFIKTLTGKTITAETEPAETVADLKQKI-ADK--EGVPVDQQRLIFAGKQLEDSK 189
SV M I KTL +T E ETV LKQKI ADK + P +LI+AGK L D
Sbjct: 64 SVNMIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDN 123
Query: 190 TMADYNIQKES 222
+ +YNI ++S
Sbjct: 124 PLKEYNIDEKS 134
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 94 VADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQK 216
V LK +I K G+P D QRL F K+L D T+A N+++
Sbjct: 29 VFQLKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVNLKQ 69
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +1
Query: 64 ITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 207
+T +T +ET + +EG+P ++QRLIF GK L+D K + +++
Sbjct: 3 VTVKTLDSET----RTFTVSEEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 91 TVADLKQKIADKEGVPVDQQRLIF-AGKQLEDSKTMADYNIQKESTLHM 234
TV DLK + +K G+ V RL+ GK++ D + DYNI T+ +
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 33.9 bits (74), Expect = 0.027
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 130 GVPVDQQRLIFAGKQLEDSKTMADYN 207
G+P ++QRLIF GK L+D K + +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
Length = 1425
Score = 33.5 bits (73), Expect = 0.036
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Frame = +1
Query: 19 SVKMQIF---IKTLTGKTIT-AETEPAETVADLKQKIADKEGVPVDQQRLIFA-GKQLED 183
S K+++F +K T + T + P TV DLK +I + GVP RL + G L D
Sbjct: 1048 SAKIRLFSLHLKFPTDEKFTISRVCPGMTVKDLKNRIELETGVPRHLLRLRYLDGYDLTD 1107
Query: 184 SKTMADYNIQKESTLHMVL 240
+ ++ YN+ +T+ ++L
Sbjct: 1108 DRRLSYYNMVPAATVQVLL 1126
>SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 32.7 bits (71), Expect = 0.063
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 91 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRL 246
TV LKQ I +EG + +Q + F G QL D+ T+ + S H+ LR+
Sbjct: 29 TVLRLKQLIEAQEGFGISEQEVHFQGNQLVDALTLGQQGVLDGS--HLDLRV 78
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +1
Query: 10 RSNSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSK 189
R + + ++T G T+ E +V DLK + + G+PV+ RL LEDS+
Sbjct: 177 RLKFARKTMLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSE 236
Query: 190 TMADYNIQKEST 225
+ + +++T
Sbjct: 237 KICERGHLQKAT 248
>SB_11656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 31.1 bits (67), Expect = 0.19
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 55 GKTITAETEPA-ETVADLKQKIADKEGVPVDQQ-RLIFAGKQLEDSKTMADYN 207
G T E E A E+V L IA G+PVD+Q LI G+ L+ + + +Y+
Sbjct: 10 GAMYTFEMEMAMESVETLMGSIASSTGIPVDKQVLLICGGEALDPNDRVCNYS 62
>SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)
Length = 309
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/72 (22%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +1
Query: 40 IKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSK---TMADYNI 210
+ + G+T P ++A+LK KI+ V +QRL++ +L+++K ++++ +
Sbjct: 60 VAMMGGETTVIPYNPVMSIAELKLKISQNIRVDRLKQRLMYNDTELKENKGSGKLSEFGV 119
Query: 211 QKESTLHMVLRL 246
+T+ +++ L
Sbjct: 120 PPYATISLIVVL 131
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 30.3 bits (65), Expect = 0.33
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 58 KTITAETEPAETVADLKQKIAD-KEGVPVDQQRLIFAGKQLEDSKTMAD-YNIQKES 222
K + + EP E V + QK+ D E VPV + +L A K D+K D +I+KES
Sbjct: 799 KALEGKEEPEEKVEE--QKVVDMNEDVPVMEDKLEEAAKVANDNKIDYDIVDIKKES 853
>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 35
Score = 29.5 bits (63), Expect = 0.58
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 28 MQIFIKTLTGKTITAETEPAETVADLKQKI 117
M ++I+TLTG P ET+ +K KI
Sbjct: 1 MDLYIQTLTGTAFELRVSPFETIMSVKAKI 30
>SB_43701| Best HMM Match : ubiquitin (HMM E-Value=0.003)
Length = 227
Score = 29.5 bits (63), Expect = 0.58
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 94 VADLKQKIADKEGVPVDQQRLIFAGKQLED-SKTMADYNIQKESTLHMVL 240
V+D++Q VP Q+LIF GK L + ++T+ I+K S + MVL
Sbjct: 116 VSDIEQAAQQVTQVPQCSQKLIFKGKSLTNRNQTLESLGIKKGSRI-MVL 164
>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1615
Score = 29.1 bits (62), Expect = 0.77
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +1
Query: 79 EPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 228
EPA T AD + EG P +++L G L D K MA + E L
Sbjct: 1334 EPATTGADTPSESPANEGAPPAKKQLRRPGIVLSDEKKMAVKEMMMEGDL 1383
>SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 29.1 bits (62), Expect = 0.77
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +1
Query: 49 LTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTL 228
L ++ A + A + Q+I D G V + + G + D + +++ + L
Sbjct: 237 LRSPSVDATLRGQDISASVYQEIRDLGGTGVIALKPVMRGPDINDDGSHERESLRANAVL 296
Query: 229 HMVLRLRGG 255
+VLR++GG
Sbjct: 297 PLVLRMKGG 305
>SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 217 ESTLHMVLRLRGG 255
ESTLH+VLRLRGG
Sbjct: 14 ESTLHLVLRLRGG 26
>SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32)
Length = 78
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 217 ESTLHMVLRLRGG 255
ESTLH+VLRLRGG
Sbjct: 14 ESTLHLVLRLRGG 26
>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
Length = 648
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 144 STKTYLCGQTIGRFQNYGRLQYSKGIYSSHGVTITRRVL 260
STKTYLC +G F+ Y L +S G T+ RV+
Sbjct: 201 STKTYLCKLCLG-FRIYTHLLAKTDFHSYFGCTVHARVV 238
>SB_1963| Best HMM Match : rve (HMM E-Value=0.022)
Length = 931
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 40 IKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSK 189
+ +L G I P AD++ +P DQ L F + LED +
Sbjct: 533 LNSLVGVLIRFREHPVAIAADIEAMFMQCRVIPTDQPSLRFLWRDLEDGR 582
>SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 173 CLPAKISLC*STGTPSLSAIFC 108
CL ++S+C STG +LS + C
Sbjct: 360 CLSTRLSICQSTGRQNLSVLIC 381
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 164 AKISLC*STGTPSLSAIFCLR 102
A++S+C STG +LS + C R
Sbjct: 183 ARLSICQSTGRQNLSVLICQR 203
>SB_33381| Best HMM Match : RVT_1 (HMM E-Value=0.025)
Length = 537
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +1
Query: 40 IKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSK 189
+ +L G I P AD++ +P++Q L F + LED +
Sbjct: 53 LNSLVGVLIRFREHPVAIAADIEAMFMQCRVIPIEQPSLRFLWRDLEDGR 102
>SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 503
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 65 LPPKRNPQRRWPISSKKLPIK-KVC 136
LPP PQ +W +S K+P K K C
Sbjct: 142 LPPTDKPQFKWDVSISKIPSKLKEC 166
>SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 22 VKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMAD 201
V + I ++ K IT E E+V + I ++EG + +F+ E S MAD
Sbjct: 76 VNIDIEMRQKISKNITKEVGKKESVLNCTDSIKEREGRCTNLNSGVFSHTDDEKSAMMAD 135
Query: 202 YNIQ 213
++
Sbjct: 136 TELE 139
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 53 RAKPLPPKRNPQRRWPISS 109
R P PPKR P+RR P +S
Sbjct: 1089 RRSPSPPKREPRRRSPSAS 1107
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 58 KTITAETEPAETVADLKQKIADKEGVPVDQQRLI 159
K IT E + E V K+K ++E P+D++ L+
Sbjct: 6100 KPITREEKKVEEVKPKKEKPTEREAKPLDKKPLV 6133
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/71 (18%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 10 RSNSVKMQIFIKT--LTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLED 183
+ +V++++ ++ +G + T+ L+ ++ADK G P QR I K +
Sbjct: 28 KEKTVRLRVVVEDSETSGGAFNLQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKP 87
Query: 184 SKTMADYNIQK 216
++++ +++
Sbjct: 88 NESLLQCKVRE 98
>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
Length = 1685
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +1
Query: 40 IKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKE 219
+K K P T+ L+ ++ + DQ+R + K LE+ T + I +
Sbjct: 64 VKPHPSKLFYIPQRPYMTLGTLRDQVVYPD-TEADQRRKGISDKALEEFLTQRSFPIGEY 122
Query: 220 STLHMVLRLRGGY 258
LH+ R + GY
Sbjct: 123 LPLHVPRRKKPGY 135
>SB_24392| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 26.6 bits (56), Expect = 4.1
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = -1
Query: 225 SRFLLNIVIGHSFGIFQLFARK--DKSLLIYGHTFFIGNFLLEIGHRLCGFRFGGNGFAR 52
S F N G+S+ IFQ+F+R+ D + + YG T +G + +GG +AR
Sbjct: 165 SAFQGNNWFGYSYAIFQIFSRRSVDGTPVQYGDT--VGFRYPYYYAYTWLYYYGGYWYAR 222
Query: 51 QCF--DEYLHF 25
C ++YL F
Sbjct: 223 SCSYNNKYLCF 233
>SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)
Length = 529
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 84 GFRFGGNGFARQCFDEYLHFYTITS 10
G R G G CFDEY+H + + +
Sbjct: 94 GSRNHGMGVVTGCFDEYVHSHDLAT 118
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 84 GFRFGGNGFARQCFDEYLHFYTI 16
G R G G CFDEY+H + +
Sbjct: 155 GSRNHGMGVVTGCFDEYVHRHDV 177
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 173 CLPAKISLC*STGTPSLSAIFC 108
C ++S+C STG +LS + C
Sbjct: 2 CRETRLSICQSTGRQNLSVLIC 23
>SB_27889| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 94 VADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNI-QKESTLHM 234
+A+ KQ++ +KE ++ +I A KQ + SK I +KES M
Sbjct: 71 IANQKQRVIEKEAETERKKAIIEAEKQSQVSKIQYQQKIMEKESMKKM 118
>SB_8472| Best HMM Match : TatC (HMM E-Value=1.4)
Length = 476
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 91 TVADLKQKIADKEGV--PVDQQRLIFAGKQLEDSKTMADYNI 210
T +K IAD G PVD + AG+Q++D+ + Y +
Sbjct: 227 TATHIKVAIADCLGEIGPVDLASVALAGRQVQDTSQIRGYPV 268
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,665,188
Number of Sequences: 59808
Number of extensions: 160662
Number of successful extensions: 463
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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