Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19e11
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 83 4e-17
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 30 0.24
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.3
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz... 28 1.3
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 27 3.0
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S... 27 3.0
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 4.0
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 26 4.0
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 25 6.9
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 6.9
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 25 9.1
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 25 9.1
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 9.1
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 25 9.1
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 82.6 bits (195), Expect = 4e-17
Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 7/145 (4%)
Frame = +3
Query: 210 PFKTILKAMHHAGKEPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAE 389
PFKT A+H + TI+V K+ +++++ + LKK +K + K A+AE
Sbjct: 38 PFKT---AIHALETDANCTIFV-KKNGSEEFEPITTNALKKAKKGVEQAAKKKAKAAEAE 93
Query: 390 EENT-------EKRSQNLDEAKKILLQEDPSLPKATVVKICETTEHRGQRICIRGWVHRL 548
E ++ L+ AK I+L+E P A + I ++T R R+ + GWVHR+
Sbjct: 94 AAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNGWVHRM 153
Query: 549 RRQGKSLAFLTLRDGTGYLQCVLHG 623
R Q K + F+ LRDGTG+LQCVL G
Sbjct: 154 RTQ-KGIIFIILRDGTGFLQCVLSG 177
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 30.3 bits (65), Expect = 0.24
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 504 HRGQRICIRGWVHRLRRQGKSLAFLTLRDGT 596
H G+ I I GWV +R+ K++ F + DGT
Sbjct: 18 HNGELISINGWVRSIRKL-KNVCFAMVSDGT 47
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 526 SEDGYIVSGAKVNLWHS*PCVMALGTYSAFYMGLL 630
++D Y V + ++ S P V +LG Y+ F GLL
Sbjct: 290 AKDTYFVFFMAIKIFFSEPIVSSLGIYNGFVNGLL 324
>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 129 VGNLSLSEIYTSXXXXXXXXXXXXXEKPFKTILKAMHHAGKEPFP 263
VGN+ LS I + FK L+ + GK+PFP
Sbjct: 113 VGNIELSRIVNADVRLDSSKFDIGIRPSFKNALEELTKKGKKPFP 157
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Frame = -1
Query: 284 F*VNINCGKWLFASMMHCFQYCLEW---FLFRTITCIVIAILIRGI---YLGQAKVSN 129
F N N GK++ A ++H Y LE FL+ + + I G+ +LG A N
Sbjct: 608 FHYNYNIGKFVVAWLLHWAPYILETDRVFLYHYLPALYFGIAALGVSWSFLGNAVFGN 665
>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 258
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 200 ERETIQDNIESNASCWQRAISHNL 271
E +TI DN+ SN WQ+ H +
Sbjct: 59 ELKTIDDNVHSNNLSWQKIQEHEV 82
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 4.0
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 484 KYVKQLNTVVRGYASEDGYIVSGAKVNLW--HS*PCVMALGTYSAFYMGLL 630
K+ +++ T++R Y + YI G V L HS V AL Y+ FY+GL+
Sbjct: 922 KFDQRVATIIR-YLQKKKYIKPGRVVVLMYTHSEDFVYAL--YACFYLGLI 969
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 432 KKILLQEDPSLPKATVVKICETTEHR 509
+KILL E P P A K+CET R
Sbjct: 101 RKILLTEPPMNPVANREKMCETMFER 126
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 487 YVKQLNTVVRGYASEDGYIVSGAKVNLWHS*PCVMALGTYSAFYMGLLC 633
Y ++L+++V YA E GY + N W ++ + FY+ L C
Sbjct: 293 YRRKLDSLVYQYALEKGYRQPSSSRNSWIF-TLLLTFTQLTIFYLSLNC 340
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 6.9
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -1
Query: 554 APETMYPSSDAYPLTTVFSC 495
+P+ ++ + YPL T+F+C
Sbjct: 169 SPKPLFSALQVYPLATIFNC 188
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 588 DGTGYLQCVLHG 623
D GYL+C+LHG
Sbjct: 295 DHLGYLECILHG 306
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +3
Query: 306 VAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQED 455
+ K K ++W + + AK E K +Q +E KKIL + +
Sbjct: 3 IKKKESFKSPGRLWRVTKIRKLTAAKKNELQNRKCNQASNEEKKILYKSN 52
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = +3
Query: 315 KSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLP 467
KS + + + ++ A + ++ + EKRS+N +K +L++ +LP
Sbjct: 47 KSTVSVVNFLEQDTDFGANEVVGSDNSSPEKRSENSPSKRKDILEQRKNLP 97
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 527 DAYPLTTVFSCFTYFHNSGL 468
D Y + V SCFTYF G+
Sbjct: 272 DEYLVPFVVSCFTYFLGDGI 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,698
Number of Sequences: 5004
Number of extensions: 47730
Number of successful extensions: 164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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