Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e11
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical p...   112   2e-25
U88171-1|AAB42251.2|  630|Caenorhabditis elegans Hypothetical pr...    32   0.30 
AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical...    31   0.52 
U40797-14|AAB37544.2|  200|Caenorhabditis elegans Hypothetical p...    31   0.91 
AC024841-3|AAK68542.1|  185|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    29   2.1  
U23180-3|AAC46729.2|  856|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z50016-13|CAO82071.1|  211|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z50016-12|CAA90317.3|  192|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z35639-2|CAA84694.1|  351|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z38112-4|CAA86232.1|  809|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF063007-1|AAC16430.2|  730|Caenorhabditis elegans Hypothetical ...    28   6.4  
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st...    27   8.5  

>Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical
           protein F22D6.3a protein.
          Length = 545

 Score =  112 bits (270), Expect = 2e-25
 Identities = 61/139 (43%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
 Frame = +3

Query: 207 KPFKTILKAMHHAGKEPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKA 386
           +P  T+++AM    K     +     ++ + ++ AAK+ +KK  K +  E  K ++KA  
Sbjct: 21  QPLATLVQAML-ISKNSGEFLMKKKSEEGESWEPAAKAAIKKAVKKYEAE-VKKLEKAGC 78

Query: 387 EEENTEKRSQN-LDEAKKILLQEDPSLPKATVVKICETTEHRGQRICIRGWVHRLRRQGK 563
            E+  E+     L+EAKKI    D SLP+A V+KI E+ +HR QR+ I+ WVHRLRRQGK
Sbjct: 79  REKEAEEAQHAALEEAKKITFSLDKSLPEAKVIKIGESVQHRDQRVSIKAWVHRLRRQGK 138

Query: 564 SLAFLTLRDGTGYLQCVLH 620
           SL FL LRDG G+LQCVL+
Sbjct: 139 SLMFLVLRDGYGFLQCVLN 157


>U88171-1|AAB42251.2|  630|Caenorhabditis elegans Hypothetical
           protein F25F8.1 protein.
          Length = 630

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 115 STCRTLETLACPRYIPRIRMAMTIQVMVRKRNH 213
           S CR +E +ACPR  P+I M+ T  + V  R H
Sbjct: 404 SNCRKVEVIACPR-DPKIEMSRTRWITVGPRGH 435


>AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical
           protein F36H12.3 protein.
          Length = 335

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 276 DSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKA-KAEEENTEKRSQNLDEAKKILLQE 452
           D K D KD     K + KK  K   +E  K   K  K EE+  EK+ +   E KK   +E
Sbjct: 152 DKKSDNKDDKDDEKKEEKKDDKEEKKEEKKEEKKEEKKEEKKEEKKEEEKKEEKKEEKKE 211

Query: 453 D 455
           D
Sbjct: 212 D 212



 Score = 31.5 bits (68), Expect = 0.52
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +3

Query: 276 DSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQED 455
           D K + K  D   K + KK +K   ++  K  +K K EE+  EK+ +  ++ KK+  +  
Sbjct: 163 DEKKEEKKDDKEEKKEEKKEEKKEEKKEEKKEEK-KEEEKKEEKKEEKKEDEKKV--EPK 219

Query: 456 PSLPK 470
           P  PK
Sbjct: 220 PGEPK 224


>U40797-14|AAB37544.2|  200|Caenorhabditis elegans Hypothetical
           protein C28C12.1 protein.
          Length = 200

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 381 KAEEENTEKRSQNLDEAKKILLQEDPSL 464
           K +EE TEK+   + E++K +L+ED +L
Sbjct: 160 KTDEEGTEKKEPTMTESRKEMLREDDTL 187


>AC024841-3|AAK68542.1|  185|Caenorhabditis elegans Hypothetical
           protein Y59H11AM.4 protein.
          Length = 185

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 282 KDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPS 461
           K++ KD +   ++  KKI +    E     DK   EE   EK+   L ++KK  L+ED +
Sbjct: 123 KNEEKDAEAPVENDDKKISE----EGINKTDKT--EEPELEKKKSELSDSKKERLREDDT 176

Query: 462 L 464
           L
Sbjct: 177 L 177


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
            protein Y51A2D.15 protein.
          Length = 1222

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = +3

Query: 351  RENYKAMDKAKAEEENTEKRSQNLDEAK---KILLQEDPSLPKATVVKICETTEHRGQRI 521
            +EN K  D+ +  ++ ++KRSQNLDE +   K LL +   L +   +   +  E + + +
Sbjct: 852  QENTKLRDELQEMQKMSKKRSQNLDELENMHKTLLVDHSRLQQLHNLLTRDYDEAKKESM 911

Query: 522  CIRGWVHRLRRQ 557
             +R  V  + RQ
Sbjct: 912  ELRQKVQNIPRQ 923


>U23180-3|AAC46729.2|  856|Caenorhabditis elegans Hypothetical
           protein C28F5.4 protein.
          Length = 856

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 207 KPFKTILKAMHHAGKEPFPTIYVDSKDDTK 296
           K F+T LK  HHA   P    Y+ SK D K
Sbjct: 411 KNFETALKTSHHAFNLPEKNEYIPSKFDQK 440


>Z50016-13|CAO82071.1|  211|Caenorhabditis elegans Hypothetical
           protein T21C12.4b protein.
          Length = 211

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +3

Query: 315 KSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKICE 494
           KS  K I K   R     + ++   ++  EK+  ++ E K +   +D  +P     K  E
Sbjct: 141 KSNKKSISKKSDRSKVSKVKRSPKTDKELEKKPSSIYERKDVDGHDDLKVPNMRSRKHSE 200

Query: 495 TTEHRGQRIC 524
            +++RG ++C
Sbjct: 201 NSKNRG-KVC 209


>Z50016-12|CAA90317.3|  192|Caenorhabditis elegans Hypothetical
           protein T21C12.4a protein.
          Length = 192

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +3

Query: 315 KSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKICE 494
           KS  K I K   R     + ++   ++  EK+  ++ E K +   +D  +P     K  E
Sbjct: 122 KSNKKSISKKSDRSKVSKVKRSPKTDKELEKKPSSIYERKDVDGHDDLKVPNMRSRKHSE 181

Query: 495 TTEHRGQRIC 524
            +++RG ++C
Sbjct: 182 NSKNRG-KVC 190


>Z35639-2|CAA84694.1|  351|Caenorhabditis elegans Hypothetical
           protein D2045.5 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 246 GKEPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIW 347
           G+E F  + +  K    DY VA K Q+ K  KIW
Sbjct: 305 GEEMFTALSISEKRAPNDYKVATKMQMAK--KIW 336


>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical
           protein C45G3.1 protein.
          Length = 1186

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
 Frame = +3

Query: 273 VDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEK-----RSQNLDE-AK 434
           ++ +DD+++ +    S LKK   + +  N +   +   ++EN +K      ++NLD    
Sbjct: 675 IEEEDDSENNETVVPSTLKKRTVVRMEHNAEVFREQDEDDENQDKDTVAPSAENLDSPPS 734

Query: 435 KILLQEDPSLPKAT 476
            I L+   S+P A+
Sbjct: 735 DIPLETLSSIPSAS 748


>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical
           protein F29C12.3 protein.
          Length = 1631

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = +3

Query: 315 KSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNL---DEAKKILLQEDPSLPKATVVK 485
           ++  ++IQ+I  RE+ +   +AK   E +EKR +     ++ +K++   D S  KAT  +
Sbjct: 12  ENNTQRIQEI--RESIRVKTRAKKVSETSEKRRERFRAREDVQKLIRGAD-SYTKATYEE 68

Query: 486 ICE 494
            CE
Sbjct: 69  KCE 71


>Z38112-4|CAA86232.1|  809|Caenorhabditis elegans Hypothetical
           protein E03A3.2 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
 Frame = +3

Query: 243 AGKEPFPTIYVDSKDDTKDYDVAAK--SQLKKIQKIWVREN-----YKAMDKAKAEEENT 401
           +GK    TI +D  D+  D + AAK  S      +I+ ++        A++KAK + E  
Sbjct: 11  SGKRSLETITIDDSDEETDKEPAAKKPSNYTAWAEIFNKKKTESSAVSAIEKAKKDSEK- 69

Query: 402 EKRSQNLDEA-----KKILLQEDPSLPKATVVKICETTEHRGQRI 521
           E++ Q L EA     ++  L  +P   K   V   +  +   Q+I
Sbjct: 70  ERQRQKLREAIMERKRREALMNEPKKQKIEPVSTVKLEKSVNQKI 114


>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
           protein F29C12.3 protein.
          Length = 1631

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = +3

Query: 315 KSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNL---DEAKKILLQEDPSLPKATVVK 485
           ++  ++IQ+I  RE+ +   +AK   E +EKR +     ++ +K++   D S  KAT  +
Sbjct: 12  ENNTQRIQEI--RESIRVKTRAKKVSETSEKRRERFRAREDVQKLIRGAD-SYTKATYEE 68

Query: 486 ICE 494
            CE
Sbjct: 69  KCE 71


>AF063007-1|AAC16430.2|  730|Caenorhabditis elegans Hypothetical
           protein R119.1 protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 399 TEKRSQNLDEAKKILLQEDPSLPKATVVKICETTE 503
           T    +NLD       QED  LP+    K+C+ TE
Sbjct: 648 TSVGEENLDPMDYCTCQEDEILPEDPCFKVCDITE 682


>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 1 protein.
          Length = 1616

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 23/90 (25%), Positives = 39/90 (43%)
 Frame = +3

Query: 315  KSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKICE 494
            K+  K  ++ +  E Y   +    E+ENT K+ +N    KK  L E   + K    +IC 
Sbjct: 1489 KNYRKYDERKYESEEYSFEETYDYEQENTNKKQKNQRSQKKSDLVEKTQI-KEFSHRICF 1547

Query: 495  TTEHRGQRICIRGWVHRLRRQGKSLAFLTL 584
            + E   +  C R     + +Q + + F  L
Sbjct: 1548 SVEPVAE--CRRRGYEAVEQQQRKVRFTCL 1575


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,098
Number of Sequences: 27780
Number of extensions: 269846
Number of successful extensions: 892
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)