Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19e11
(635 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g70980.1 68414.m08188 asparaginyl-tRNA synthetase, cytoplasmi... 32 0.37
At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative / as... 31 0.64
At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative / as... 31 0.64
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 31 0.85
At5g44310.2 68418.m05424 late embryogenesis abundant domain-cont... 30 1.1
At5g44310.1 68418.m05423 late embryogenesis abundant domain-cont... 30 1.1
At3g02860.2 68416.m00279 expressed protein 30 1.5
At3g02860.1 68416.m00278 expressed protein 30 1.5
At1g69810.1 68414.m08032 WRKY family transcription factor 30 1.5
At1g04550.2 68414.m00448 auxin-responsive protein / indoleacetic... 30 1.5
At1g04550.1 68414.m00447 auxin-responsive protein / indoleacetic... 30 1.5
At3g25440.1 68416.m03163 group II intron splicing factor CRS1-re... 29 2.0
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 29 2.6
At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplas... 29 3.4
At3g02930.1 68416.m00288 expressed protein ; expression support... 29 3.4
At4g15417.1 68417.m02358 ribonuclease III family protein similar... 28 4.5
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 28 4.5
At1g58270.1 68414.m06628 meprin and TRAF homology domain-contain... 28 4.5
At5g23760.1 68418.m02790 heavy-metal-associated domain-containin... 28 6.0
At2g40935.2 68415.m05054 expressed protein low similarity to PGP... 28 6.0
At1g11545.1 68414.m01326 xyloglucan:xyloglucosyl transferase, pu... 28 6.0
At3g20040.1 68416.m02535 hexokinase, putative similar to hexokin... 27 7.9
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 27 7.9
At1g77460.1 68414.m09020 C2 domain-containing protein / armadill... 27 7.9
At1g36970.1 68414.m04608 hypothetical protein 27 7.9
>At1g70980.1 68414.m08188 asparaginyl-tRNA synthetase, cytoplasmic,
putative / asparagine-tRNA ligase, putative similar to
SYNC1 protein GI:5670315 [SP|Q9SW96] from [Arabidopsis
thaliana]
Length = 571
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 510 GQRICIRGWVHRLRRQGK-SLAFLTLRDGT 596
GQ++ I GWV R+QGK + AFL + DG+
Sbjct: 47 GQKVRIGGWVKTGRQQGKGTFAFLEVNDGS 76
>At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative similar to
Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
(AspRS) [Homo sapiens] GI:20178330
Length = 558
Score = 31.1 bits (67), Expect = 0.64
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Frame = +3
Query: 309 AAKSQLKKIQKIWVRENYKAMDKAKAE---EENTEKRSQNLDEAKKILLQE--DPSLPK- 470
AAK + K++K+ R+ + + A EEN E S N + LQ DP K
Sbjct: 28 AAKKEAAKLEKLRRRQEQEEATRRTASISLEENDEF-SNNYGDVTLTELQSSADPKAGKW 86
Query: 471 ATVVKICETT-------EHRGQRICIRGWVHRLRRQGKSLAFLTLRDGTGYLQCVL 617
V+ E T E + IRG VH R L F+ LR+ +QCV+
Sbjct: 87 IEAVEGKEWTDVSDLVEEMLESEVLIRGRVHTNRPTSNKLGFVVLRESGSTVQCVV 142
>At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative similar to
Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
(AspRS) [Homo sapiens] GI:20178330
Length = 558
Score = 31.1 bits (67), Expect = 0.64
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Frame = +3
Query: 309 AAKSQLKKIQKIWVRENYKAMDKAKAE---EENTEKRSQNLDEAKKILLQE--DPSLPK- 470
AAK + K++K+ R+ + + A EEN E S N + LQ DP K
Sbjct: 28 AAKKEAAKLEKLRRRQEQEEATRRTASISLEENDEF-SNNYGDVTLTELQSSADPKAGKW 86
Query: 471 ATVVKICETT-------EHRGQRICIRGWVHRLRRQGKSLAFLTLRDGTGYLQCVL 617
V+ E T E + IRG VH R L F+ LR+ +QCV+
Sbjct: 87 IEAVEGKEWTDVSDLVEEMLESEVLIRGRVHTNRPTSNKLGFVVLRESGSTVQCVV 142
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 30.7 bits (66), Expect = 0.85
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 354 ENYKA-MDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKICETTEHRGQR 518
EN A M+K K+ EE EK+++ +DEA ++ + +L K + +K+ +T E R
Sbjct: 289 ENLNAVMEKLKSSEERLEKQAREIDEATTRSIELE-ALHKHSELKVQKTMEDFSSR 343
>At5g44310.2 68418.m05424 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to 51 kDa seed maturation protein
[Glycine max] GI:414977; contains Pfam profile PF02987:
Late embryogenesis abundant protein
Length = 331
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/81 (22%), Positives = 39/81 (48%)
Frame = +3
Query: 276 DSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQED 455
D K+ TKDY AK ++ + + Y+ +KAK + + ++++++ E K + E
Sbjct: 139 DVKEKTKDYAEEAKDKVNEGASRAADKAYETKEKAKDKAYDVKEKTKDFAEETKEKVNEG 198
Query: 456 PSLPKATVVKICETTEHRGQR 518
S + E T++ ++
Sbjct: 199 ASRAADKAYDVKEKTKNYAEQ 219
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/78 (24%), Positives = 36/78 (46%)
Frame = +3
Query: 228 KAMHHAGKEPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEK 407
K H KE D K+ TKDY K+++ + + Y+ +KAK + + ++
Sbjct: 83 KGKAHKTKEEAKDKAYDMKERTKDYAEQTKNKVNEGASRAADKAYETKEKAKDKAYDVKE 142
Query: 408 RSQNLDEAKKILLQEDPS 461
++++ E K + E S
Sbjct: 143 KTKDYAEEAKDKVNEGAS 160
>At5g44310.1 68418.m05423 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to 51 kDa seed maturation protein
[Glycine max] GI:414977; contains Pfam profile PF02987:
Late embryogenesis abundant protein
Length = 295
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/81 (22%), Positives = 39/81 (48%)
Frame = +3
Query: 276 DSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQED 455
D K+ TKDY AK ++ + + Y+ +KAK + + ++++++ E K + E
Sbjct: 103 DVKEKTKDYAEEAKDKVNEGASRAADKAYETKEKAKDKAYDVKEKTKDFAEETKEKVNEG 162
Query: 456 PSLPKATVVKICETTEHRGQR 518
S + E T++ ++
Sbjct: 163 ASRAADKAYDVKEKTKNYAEQ 183
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/78 (24%), Positives = 36/78 (46%)
Frame = +3
Query: 228 KAMHHAGKEPFPTIYVDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEK 407
K H KE D K+ TKDY K+++ + + Y+ +KAK + + ++
Sbjct: 47 KGKAHKTKEEAKDKAYDMKERTKDYAEQTKNKVNEGASRAADKAYETKEKAKDKAYDVKE 106
Query: 408 RSQNLDEAKKILLQEDPS 461
++++ E K + E S
Sbjct: 107 KTKDYAEEAKDKVNEGAS 124
>At3g02860.2 68416.m00279 expressed protein
Length = 313
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +3
Query: 276 DSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQED 455
D KD+ K+++ + L+ + R + +D A+ EE ++ ++ E +IL ++
Sbjct: 209 DIKDEYKEFEKLIQDDLQVVDS---RMEEEEVDAAETIEEEEQREQRSYKEKVEILKRKK 265
Query: 456 PSLPKATVVKICETTE 503
L A + K +T+E
Sbjct: 266 MELKAARLAKRSKTSE 281
>At3g02860.1 68416.m00278 expressed protein
Length = 312
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +3
Query: 276 DSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQED 455
D KD+ K+++ + L+ + R + +D A+ EE ++ ++ E +IL ++
Sbjct: 208 DIKDEYKEFEKLIQDDLQVVDS---RMEEEEVDAAETIEEEEQREQRSYKEKVEILKRKK 264
Query: 456 PSLPKATVVKICETTE 503
L A + K +T+E
Sbjct: 265 MELKAARLAKRSKTSE 280
>At1g69810.1 68414.m08032 WRKY family transcription factor
Length = 387
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +3
Query: 270 YVDSKDDTKDYDVAAKSQL-KKIQKIWVRENYKAMDK--AKAEEENTEKRS 413
++D +D+ DYDV +L + QKI +E K +DK K EE+ +KRS
Sbjct: 78 HIDRQDENNDYDVDISLRLGRSEQKISKKEENK-VDKISTKNVEESKDKRS 127
>At1g04550.2 68414.m00448 auxin-responsive protein / indoleacetic
acid-induced protein 12 (IAA12) identical to SP|Q38830
Auxin-responsive protein IAA12 (Indoleacetic
acid-induced protein 12) {Arabidopsis thaliana}
Length = 239
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 357 NYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKI 488
N +AM A+AEE + EK+ DE K + ++ +P + VK+
Sbjct: 86 NNQAMKAARAEEGDGEKKVVKNDELKDVSMKVNPKVQGLGFVKV 129
>At1g04550.1 68414.m00447 auxin-responsive protein / indoleacetic
acid-induced protein 12 (IAA12) identical to SP|Q38830
Auxin-responsive protein IAA12 (Indoleacetic
acid-induced protein 12) {Arabidopsis thaliana}
Length = 173
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 357 NYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKI 488
N +AM A+AEE + EK+ DE K + ++ +P + VK+
Sbjct: 86 NNQAMKAARAEEGDGEKKVVKNDELKDVSMKVNPKVQGLGFVKV 129
>At3g25440.1 68416.m03163 group II intron splicing factor
CRS1-related contains weak similarity to CRS1 [Zea mays]
gi|9837550|gb|AAG00595
Length = 380
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 354 ENYKAMDKAKAE-EENTEKRSQNLDEAKKILLQ 449
E++ + KAK+E EEN + +S N DE K+ L+
Sbjct: 338 EDFGDLGKAKSEGEENDDDKSPNFDEVDKMFLR 370
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/45 (22%), Positives = 26/45 (57%)
Frame = +3
Query: 300 YDVAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAK 434
Y++ K + + W++++ ++M+ +EE+ E+R N+ + K
Sbjct: 650 YEIERKGSRENADRTWLKKHAESMELELDDEESEEERVDNVRQRK 694
>At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplasmic
/ asparagine-tRNA ligase 1 (SYNC1) identical to
SP|Q9SW96
Length = 572
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 510 GQRICIRGWVHRLRRQGK-SLAFLTLRDGT 596
GQ + I GWV R QGK + +FL + DG+
Sbjct: 50 GQTVRIGGWVKSGRDQGKRTFSFLAVNDGS 79
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 288 DTKDYDVAAKSQLKKIQKIWV---RENYKAMDKAKAEEENTEKRSQNLDEA 431
+++ V K LKK ++ E KA+D+ K + E+ S+ LDEA
Sbjct: 84 ESQPQSVQIKEDLKKANELIASLENEKAKALDQLKEARKEAEEASEKLDEA 134
>At4g15417.1 68417.m02358 ribonuclease III family protein similar to
CAF protein (RNA helicase/RNAseIII) [Arabidopsis
thaliana] GI:6102610; contains Pfam profile PF00636
RNase3 domain
Length = 213
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 273 VDSKDDTKDYDVAAKSQLKKIQKIWVRENYKAMDKA 380
+D KD+TK A QL +I+ + NYK DK+
Sbjct: 9 IDGKDNTKTIGSADPDQLMEIESLEKILNYKFKDKS 44
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 282 KDDTKDYDVAAKSQLKKIQ--KIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQED 455
K D +D D+ K +K ++ K R+ + +K KAE+E + + E KK +ED
Sbjct: 440 KSDEEDADICIKRLVKTLEEEKEKARKLAEEEEKKKAEKEAKKMKKAEEAEEKKKKTEED 499
Query: 456 PSLPK 470
K
Sbjct: 500 EKKEK 504
>At1g58270.1 68414.m06628 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 396
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 522 ISSDHGVQLFHIFSQQWPLVNLDPL 448
IS + Q FH+F QQW L+ P+
Sbjct: 184 ISQETEAQRFHLFKQQWGLLQFLPI 208
>At5g23760.1 68418.m02790 heavy-metal-associated domain-containing
protein Pfam profile PF00403: Heavy-metal-associated
domain
Length = 103
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +3
Query: 306 VAAKSQLKKIQKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDP 458
VA +LKK+ K+ + A ++ K EE+ EK+ + +E K+ +E+P
Sbjct: 52 VAVVKKLKKVGKVDLISVGPAKEEKK-EEKKEEKKEEKKEEKKEEQKEEEP 101
>At2g40935.2 68415.m05054 expressed protein low similarity to
PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
profile PF04749: Protein of unknown function, DUF614
Length = 166
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = -1
Query: 356 LADPNLLDFL-QLRF---CCYIIILSVIF*VNINC-GKWLFASMMHCFQYCLEWFLFRTI 192
L PNLL F +++F C + IF N G FA C +C+ W L TI
Sbjct: 20 LCHPNLLHFTTRIKFVKGCVGLFCPCYIFGKNAELLGSGTFAGP--CLTHCISWALVNTI 77
Query: 191 TC 186
C
Sbjct: 78 CC 79
>At1g11545.1 68414.m01326 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
endo-xyloglucan transferase GI:2244732 from [Gossypium
hirsutum]
Length = 305
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 249 KEPFPTIYVDSKDDTKD-YDVAAKSQLKKIQKIWVRENYKAMDKAKAEE 392
K+PFP + ++ D YD S+ +K+ WV+ N D K E
Sbjct: 242 KDPFPACVSTTTENWWDQYDAWHLSKTQKMDYAWVQRNLVVYDYCKDSE 290
>At3g20040.1 68416.m02535 hexokinase, putative similar to hexokinase
1 [Spinacia oleracea] Swiss-Prot:Q9SEK3
Length = 488
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 390 EENTEKRSQNLDEAKKILLQEDPSLPKATVVKICETTEHRGQRICIRGWVHRLRRQ 557
E++T + + K + + E P + VVKIC+ R R+ G L++Q
Sbjct: 364 EDDTSELQEVARILKDLGVSEVPMKVRKLVVKICDVVTRRAARLAAAGIAGILKKQ 419
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 336 QKIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATV 479
Q + E + + EEE E+ +QN +E +KI +E +A+V
Sbjct: 700 QNRYTSEEVRGTEGVGLEEEEEEEENQNWEEQRKIQEEEGTESHEASV 747
>At1g77460.1 68414.m09020 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2110
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 363 KAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLP 467
KA++K A ++ + E K++LQEDP P
Sbjct: 1593 KALEKISASWPKAVLDAEGIFELSKVILQEDPQPP 1627
>At1g36970.1 68414.m04608 hypothetical protein
Length = 439
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 339 KIWVRENYKAMDKAKAEEENTEKRSQNLDEAKKILLQEDPSLPKATVVKICETTE 503
K+WV ++ K + E + RSQNL+ KKI + LPK KI + +
Sbjct: 158 KLWVNSLLSSV-KHEFAESVKKLRSQNLNLLKKIKALKSVKLPKFRYHKISRSRQ 211
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,008,245
Number of Sequences: 28952
Number of extensions: 253008
Number of successful extensions: 820
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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