Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e09
         (259 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4602| Best HMM Match : dsrm (HMM E-Value=5.9e-14)                   28   1.0  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 26   4.2  
SB_54654| Best HMM Match : rve (HMM E-Value=0.0035)                    25   7.4  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     25   7.4  
SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.4  
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)                 25   9.7  
SB_27993| Best HMM Match : zf-C5HC2 (HMM E-Value=1.5)                  25   9.7  

>SB_4602| Best HMM Match : dsrm (HMM E-Value=5.9e-14)
          Length = 579

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 19  CLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNI--KKSVYENITYVRKLMCKENMPGEHDH 192
           CL C+MD Y+LH+    +R  +  +   D  +  ++S  +N +   K++ +      H+ 
Sbjct: 118 CLNCSMDCYALHSVKGYDRVLVNKSLESDPEVLRQRSSSKNFSLPFKILLQHEAESSHEA 177

Query: 193 KF 198
            F
Sbjct: 178 MF 179


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 73  GCCCKNCATNN 41
           GCCCKNC+  +
Sbjct: 314 GCCCKNCSNKS 324


>SB_54654| Best HMM Match : rve (HMM E-Value=0.0035)
          Length = 466

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 95  RYTMVTLKNRFTKISHMF 148
           RYT   + NR+T I+H+F
Sbjct: 392 RYTTTNVFNRYTAINHLF 409


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 129 RKYHICSQADVQRKYAWRARSQVLQSRL*QRKQI 230
           R  +ICS+ D  R++ W +   V   R+ QRK++
Sbjct: 879 RTVYICSEPDCNREFPWPS-WLVKHRRIHQRKKV 911


>SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 25  CCTMDNYSLHNFYNNNR 75
           C   DNY+  NFYN+ R
Sbjct: 108 CIVRDNYASRNFYNDVR 124


>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
          Length = 255

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 58  FYNNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKEN 171
           F++ +    KP  L DG +  S+    T +R    KEN
Sbjct: 107 FHHRDTNTKKPVHLRDGRVTVSLAAMTTLMRDTNVKEN 144


>SB_27993| Best HMM Match : zf-C5HC2 (HMM E-Value=1.5)
          Length = 298

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = -1

Query: 76  CGCC--CKNCATNNYP 35
           CG C  C NC+ NN P
Sbjct: 112 CGLCQNCANCSNNNVP 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,612,232
Number of Sequences: 59808
Number of extensions: 116608
Number of successful extensions: 242
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 16,821,457
effective HSP length: 62
effective length of database: 13,113,361
effective search space used: 301607303
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)