Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e09
         (259 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12820.1 68417.m02010 F-box family protein similar to F-box p...    29   0.56 
At1g54320.1 68414.m06193 LEM3 (ligand-effect modulator 3) family...    28   0.74 
At5g48385.1 68418.m05980 expressed protein                             27   2.3  
At2g22980.1 68415.m02731 serine carboxypeptidase S10 family prot...    27   2.3  
At1g08035.1 68414.m00877 expressed protein ; expression supporte...    27   2.3  
At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putati...    26   4.0  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    25   5.2  
At4g30110.1 68417.m04281 ATPase E1-E2 type family protein / halo...    25   9.1  
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ...    25   9.1  

>At4g12820.1 68417.m02010 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 442

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 40  NYSLHNFYNNNRKPLKPT-TLHDGNIKKSVYENIT 141
           ++ + N +   R PL P  +  DGN+ K VYEN++
Sbjct: 168 DFHILNLFTRVRIPLPPLESTGDGNVFKRVYENVS 202


>At1g54320.1 68414.m06193 LEM3 (ligand-effect modulator 3) family
           protein / CDC50 family protein Similar to GI:11994416;
           GI:4966357; GI:4835763; GI:9757735 from [Arabidopsis
           thaliana]
          Length = 349

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 43  YSLHNFYNNNRKPLKPTTLHDGNIKKSVYEN 135
           Y L NFY N+R+ +K  +  D  ++ + YEN
Sbjct: 125 YQLENFYQNHRRYVKSRS--DSQLRSTKYEN 153


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 22  LCCTMDNYSLHNFYNNNRKPL 84
           LC  MD+  LH F ++NRK L
Sbjct: 178 LCGDMDSTGLHKFVSDNRKNL 198


>At2g22980.1 68415.m02731 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P37890) from [Oryza sativa]
          Length = 313

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 28  CTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKSV---YENITY 144
           C +  Y+L  F+ NN+   +   ++ G+I K V   Y+NI+Y
Sbjct: 168 CFLYRYTLITFWANNKSVREALQVNKGSIGKWVQCNYKNISY 209


>At1g08035.1 68414.m00877 expressed protein ; expression supported
           by MPSS
          Length = 111

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 49  LHNFYNNNRKPLKPTTLHDGNIKKSVYENI-TYVRKLMCKENMPGEH 186
           L + YNN+ +    TT  D  I +S+Y+NI + V  L  +E+  G H
Sbjct: 35  LCDHYNNHMRIDSLTTCSDEEIIESLYQNIFSIVLCLQTEESGYGSH 81


>At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]; oxidosqualene cyclase; also highly
           similar to beta-amyrin synthase, lupeol synthase,
           cycloartenol synthase
          Length = 729

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 103 DGNIKKSVYENITYVRKLMCKENMPGEHDHKF 198
           D  I+ ++ +  +Y+RK    EN PG++ + F
Sbjct: 434 DDEIRPTLIKGYSYLRKSQFTENPPGDYINMF 465


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 76  CGCCCKNCATNNYP*CSTGNITD 8
           C C  K+ +T N+P  +T + TD
Sbjct: 401 CHCAVKSTSTENHPPSNTSHTTD 423


>At4g30110.1 68417.m04281 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985]
          Length = 951

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 76  KPLKPTT--LHDGNIKKSVYENITYVRKLMCKENMPGEHDH 192
           KP K ++   H G  +    +N+T V+K  C E +   H H
Sbjct: 755 KPAKASSDHSHSGCCETKQKDNVTVVKKSCCAEPVDLGHGH 795


>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
           XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 947

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 142 YVRKLMCKENMPGEHDHK 195
           YV+ ++   N+PGE +HK
Sbjct: 191 YVKVILSDSNVPGEGEHK 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,338,711
Number of Sequences: 28952
Number of extensions: 69516
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 12,070,560
effective HSP length: 64
effective length of database: 10,217,632
effective search space used: 214570272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)