Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e08
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579...    33   0.27 
06_03_0784 - 24557089-24557198,24557296-24560725                       28   7.7  

>03_04_0110 -
           17357323-17357403,17357487-17357595,17357737-17357906,
           17358503-17358649,17358767-17358925,17359410-17359469,
           17359659-17359705,17359786-17359888,17362640-17363080
          Length = 438

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = -2

Query: 320 VAVINMDHGNFMIEKEISYSINFSQDLLYKILNSYI---VPNYSLAQQYFDLYDENGFRT 150
           + V+N  H  F+ E  ++Y +++ +  +Y  ++  I      +SL Q Y DL+D+     
Sbjct: 216 IEVVNRLHKEFVHETLLNYGVHYDKTWIYDKIHHEINQFCSAHSLQQVYIDLFDQIDETM 275

Query: 149 RIPIQSACNNIISSVK 102
           +  IQ  C      ++
Sbjct: 276 KEAIQRDCTRYAPGIE 291


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +3

Query: 405 ACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDE--DDNQFKMTIARHLVGN 578
           A + Y      D Y    W IC SH+  + +++K +L   D+  D   F  ++ +  + N
Sbjct: 228 AQLIYNDKRIEDNYDLRAW-ICVSHVFDKVRITKEILTSIDKTIDLTNFNFSMLQEELKN 286

Query: 579 KERGIKRILIPSATNYQE 632
           K +  K +L+     Y E
Sbjct: 287 KVKMKKFLLVLDDVWYDE 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,101,710
Number of Sequences: 37544
Number of extensions: 330404
Number of successful extensions: 679
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)