Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e08
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      29   3.4  
SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)            29   3.4  
SB_52094| Best HMM Match : PI-PLC-X (HMM E-Value=0.14)                 28   5.9  
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)                     28   5.9  
SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)          28   7.9  

>SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 125 NNIISSVKKTNSKHKKFVYWPKDTNALVPLVWRESKEI 12
           +N IS +    ++ +K V WP+ T+  +PL W + KE+
Sbjct: 166 DNKISHLTDQVTEWRKLVKWPRITSMCLPLQWSQWKEV 203


>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1203

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 438 DAYHD-DGWFICNSHLIKRFKMSKMVLP--IFDEDDNQFKMTIARHLVGNKER 587
           DA  D  GW++    L+K+F+ S+M     + D+D   ++  +   L  NKE+
Sbjct: 186 DASSDFKGWYLLKKQLLKKFENSRMATKKLVSDDDGTPYRKKMKLSLKVNKEQ 238


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 396 SFDACITYKSPC-SPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDDNQFKMTIARHLV 572
           SFD+ I   +P    ++ H  G  I  S +      S  V  IFD+DD    +T+ R+  
Sbjct: 316 SFDSGIVQNNPSFKSNSLHSVGQRITTSTITP----STTVNLIFDDDDGDGGLTVTRYAS 371

Query: 573 GNKERGI 593
           GN   G+
Sbjct: 372 GNAFSGV 378


>SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)
          Length = 321

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +3

Query: 450 DDGWFICNSHLIKRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSA 617
           DD  F  NS   KR     + L +F +    F +T A  ++G+K R + R+LIP +
Sbjct: 141 DDAGFGPNSST-KRRPTFPVDLNLFQDLYMHFNLTEANLVLGSKVRNVLRVLIPKS 195


>SB_52094| Best HMM Match : PI-PLC-X (HMM E-Value=0.14)
          Length = 526

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 227 LNSYIVPNYSLAQQYFDLYDENGFRTRIP--IQSACNNIISSVKKTNSKHKK 78
           L S    NYS      ++Y++NGFR  +   I S    +ISS K+ + ++ K
Sbjct: 334 LGSVFKSNYSKGVTLEEVYNDNGFRNSLGFLIPSNITKLISSPKEKDYRNVK 385


>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
          Length = 172

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -2

Query: 137 QSACNNIISSVKKTNSKHKKFVY----WPKDTNALVPLVWRESK 18
           QS    IIS V K N K  KF+     WP D  A V  +W E K
Sbjct: 35  QSPYKAIISQVSKENLKTSKFIMSKKPWPMD-RAKVVRMWIEGK 77


>SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)
          Length = 673

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 233 KILNSYIVPNYSLAQQYFDLYDENGFRTRIPIQSACNNIISSVKKTN 93
           K+L+ Y V + S+  QY   YDE   R +I  + A  N +  +  T+
Sbjct: 97  KVLSCYFVLSGSVEAQYSIDYDEEDIRGKIAGKDAQGNSLCEINYTH 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,282,845
Number of Sequences: 59808
Number of extensions: 398735
Number of successful extensions: 980
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)