Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e07
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49800.1 68416.m05445 BSD domain-containing protein contains ...    29   3.1  
At3g28460.1 68416.m03556 expressed protein contains Pfam PF03602...    29   3.1  
At5g59680.1 68418.m07482 leucine-rich repeat protein kinase, put...    28   4.1  
At5g57880.1 68418.m07240 expressed protein  ; expression support...    27   9.5  
At3g61780.1 68416.m06931 expressed protein ; expression supporte...    27   9.5  
At1g52830.1 68414.m05973 auxin-responsive protein / indoleacetic...    27   9.5  

>At3g49800.1 68416.m05445 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 428

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -2

Query: 243 STVYINIMLVPVH*HRIEFWKLFFVNVQPIVVCGHVHNQVFD*FVAYVALRFHQIVRKRK 64
           S   + I L P +     FW+++FV V PI              +   AL  H+++RKR 
Sbjct: 217 SLAALRIELCPAYMSEYCFWRIYFVLVHPIFSKHDALTLSTPQVLESRALLSHELLRKRN 276

Query: 63  K 61
           K
Sbjct: 277 K 277


>At3g28460.1 68416.m03556 expressed protein contains Pfam PF03602:
           Conserved hypothetical protein 95
          Length = 314

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 257 VFFGDRLSILTSCSCLYTSTELNFGNCFLSMY 162
           V +  R ++L SC CL   T+  FG   L++Y
Sbjct: 272 VEYPSRTTMLDSCGCLEKMTDRRFGRTHLAIY 303


>At5g59680.1 68418.m07482 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 882

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 298 ITEIGAGETRVFSVLLTNNLFYCNTMIIQHENPKCPIEFTYPETDMQSACSALLKNRNGQ 477
           I E+ A ETR F++LL   LF+    ++  +     I    P T     C+  L   N  
Sbjct: 283 IQELQANETREFNMLLNGKLFF--GPVVPPKLAISTILSVSPNTCEGGECNLQLIRTNRS 340

Query: 478 SVPP 489
           ++PP
Sbjct: 341 TLPP 344


>At5g57880.1 68418.m07240 expressed protein  ; expression supported
           by MPSS
          Length = 385

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 99  ALRFHQIVRKRKKAIANTNLNLKRA---FHRDVY 7
           ALR+ Q  ++RKK I     +LK A   FHRD++
Sbjct: 50  ALRWKQKAKERKKEIIRLQEDLKDAESSFHRDLF 83


>At3g61780.1 68416.m06931 expressed protein ; expression supported
           by MPSS
          Length = 1121

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 15  RDGMPVSDSSLY*RSLFCVSSQFGGTAKRRRQQINRKL 128
           R  +P+S    Y  S+  VS++FG T+ RRR  + +K+
Sbjct: 30  RFNLPISKFHYYRVSILRVSARFGETS-RRRNSLRKKI 66


>At1g52830.1 68414.m05973 auxin-responsive protein / indoleacetic
           acid-induced protein 6 (IAA6) nearly identical to
           SP|Q38824 Auxin-responsive protein IAA6 (Indoleacetic
           acid-induced protein 6) {Arabidopsis thaliana}
          Length = 189

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 25/104 (24%), Positives = 42/104 (40%)
 Frame = +1

Query: 121 ENLIVYVPTDDDRLYIDKKQFPKFNSVLVYRHEHDVNIDSRSPKKTASATIVYWNPLMPI 300
           EN +V    +D+ L + K Q   +  V  YR +   N +  S         +   P M  
Sbjct: 52  ENSVVS-SVEDESLPVVKSQAVGWPPVCSYRRKK--NNEEASKAIGYVKVSMDGVPYMRK 108

Query: 301 TEIGAGETRVFSVLLTNNLFYCNTMIIQHENPKCPIEFTYPETD 432
            ++G+  + +  V +  NLF C  + +  E  KC     Y + D
Sbjct: 109 IDLGSSNSYINLVTVLENLFGCLGIGVAKEGKKCEYIIIYEDKD 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,596,082
Number of Sequences: 28952
Number of extensions: 286973
Number of successful extensions: 868
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)