Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e06
         (412 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing...    34   1.3  
UniRef50_A3Q486 Cluster: Transcriptional regulator, TetR family;...    32   4.0  
UniRef50_A4R449 Cluster: Putative uncharacterized protein; n=1; ...    32   4.0  
UniRef50_Q6FB37 Cluster: Putative transcriptional regulator; n=1...    31   6.9  
UniRef50_UPI000038295C Cluster: hypothetical protein Magn0300173...    31   9.1  
UniRef50_A6VU03 Cluster: Phosphonate ABC transporter, periplasmi...    31   9.1  
UniRef50_A5I7C9 Cluster: Putative uncharacterized protein; n=4; ...    31   9.1  
UniRef50_Q8IDA8 Cluster: MAL13P1.296 protein; n=1; Plasmodium fa...    31   9.1  
UniRef50_A2GAQ6 Cluster: DDE superfamily endonuclease containing...    31   9.1  

>UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing
           protein 13B.; n=1; Takifugu rubripes|Rep: Ankyrin repeat
           domain-containing protein 13B. - Takifugu rubripes
          Length = 634

 Score = 33.9 bits (74), Expect = 1.3
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 160 PSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASL 273
           PSC F  PP  TVL    R  L++++  LL  +IQ SL
Sbjct: 506 PSCVFEVPPGYTVLGSKQRDTLREDEEDLLQFAIQQSL 543


>UniRef50_A3Q486 Cluster: Transcriptional regulator, TetR family;
           n=1; Mycobacterium sp. JLS|Rep: Transcriptional
           regulator, TetR family - Mycobacterium sp. (strain JLS)
          Length = 236

 Score = 32.3 bits (70), Expect = 4.0
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +1

Query: 178 TPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSF 333
           TP   TVL+D I  VLKD+ TA+LS S+        I R  V    + S+ +
Sbjct: 155 TPKLSTVLHDAIEPVLKDS-TAVLSGSVTLDEVVDLIVRMAVSHYFMPSNDY 205


>UniRef50_A4R449 Cluster: Putative uncharacterized protein; n=1;
            Magnaporthe grisea|Rep: Putative uncharacterized protein
            - Magnaporthe grisea (Rice blast fungus) (Pyricularia
            grisea)
          Length = 4052

 Score = 32.3 bits (70), Expect = 4.0
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +1

Query: 199  LYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVKS*SLILHSFG 378
            LY  +     + +T  L   + ASLPS +++  L+   H++ DSF + +    L+    G
Sbjct: 2664 LYHELHHAQFNLETGELVKMVLASLPSGQVHHLLIGYHHINMDSFSMAILMSELLQLYAG 2723

Query: 379  LLVSSRS 399
             ++  R+
Sbjct: 2724 TVLEPRT 2730


>UniRef50_Q6FB37 Cluster: Putative transcriptional regulator; n=1;
           Acinetobacter sp. ADP1|Rep: Putative transcriptional
           regulator - Acinetobacter sp. (strain ADP1)
          Length = 466

 Score = 31.5 bits (68), Expect = 6.9
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +1

Query: 148 YVFDPSCYFSTPPFDTVLYD-----NIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSR 312
           Y  D  C F   P DTVL D     N R +LK ++  ++S       P  E ++Q +   
Sbjct: 175 YSIDLICRFLLKPGDTVLLDDPCYFNFRALLKVHQVKVISVRYTPDGPDIEAFKQAIIEH 234

Query: 313 H 315
           H
Sbjct: 235 H 235


>UniRef50_UPI000038295C Cluster: hypothetical protein Magn03001734;
           n=1; Magnetospirillum magnetotacticum MS-1|Rep:
           hypothetical protein Magn03001734 - Magnetospirillum
           magnetotacticum MS-1
          Length = 101

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 351 RFYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKS 241
           R +   KG+GR ++R  Q+A DLG R   L R ++++
Sbjct: 16  RLWRSVKGLGRELSRASQVAGDLGARADELARAQQEA 52


>UniRef50_A6VU03 Cluster: Phosphonate ABC transporter, periplasmic
           phosphonate-binding protein precursor; n=23;
           Proteobacteria|Rep: Phosphonate ABC transporter,
           periplasmic phosphonate-binding protein precursor -
           Marinomonas sp. MWYL1
          Length = 347

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 244 LLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVKS*SLILHSFG 378
           +LS    A+  +S++++++VD++ VS D F +   S      SFG
Sbjct: 214 VLSGDYDAAPVASDVFKRMVDAKRVSKDDFRIIYTSPRFPTSSFG 258


>UniRef50_A5I7C9 Cluster: Putative uncharacterized protein; n=4;
           Clostridium botulinum|Rep: Putative uncharacterized
           protein - Clostridium botulinum A str. ATCC 3502
          Length = 219

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 46  NQAIIDYKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYF 174
           N  IIDY+  I DNN   +      V S++G   Y+F P+ +F
Sbjct: 39  NTTIIDYEKNIFDNNWAVYP----NVESLLGFVKYIFIPTVFF 77


>UniRef50_Q8IDA8 Cluster: MAL13P1.296 protein; n=1; Plasmodium
            falciparum 3D7|Rep: MAL13P1.296 protein - Plasmodium
            falciparum (isolate 3D7)
          Length = 3574

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
 Frame = +1

Query: 25   EDVVMATNQA-IIDYKVKIADNNLVTHKELALK--VSSIIGTRVYVFDPSC-YFSTPPFD 192
            E++VM++    ++D   K +  ++++H  L ++   ++ +     V+D    YF     +
Sbjct: 986  ENIVMSSELCELLDIYRKPSIKDILSHMNLLIRNFKNNYMQNMFKVYDYIYEYFENYILE 1045

Query: 193  TVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSS 324
              L  NI T+LK+NK +  +     ++ S+ I    ++S H++S
Sbjct: 1046 NKLNGNISTILKNNKDSPKNNINSNNIDSNNINSSHINSSHINS 1089


>UniRef50_A2GAQ6 Cluster: DDE superfamily endonuclease containing
           protein; n=1; Trichomonas vaginalis G3|Rep: DDE
           superfamily endonuclease containing protein -
           Trichomonas vaginalis G3
          Length = 398

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 76  IADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIR 216
           I D N+     LAL +  +    VY+F   C     PFD  L  N+R
Sbjct: 315 ILDGNMSRECPLALSILRLHRVHVYIFPSHCTHVYQPFDIGLAGNVR 361


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 357,971,751
Number of Sequences: 1657284
Number of extensions: 6176275
Number of successful extensions: 18512
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18509
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18619342852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)