Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e06
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   0.49 
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   1.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   1.1  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    26   2.0  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   2.6  
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual         26   2.6  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   3.5  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   3.5  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   4.6  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   6.1  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   6.1  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   6.1  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    24   8.0  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    24   8.0  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 321 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 193
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 166 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 261
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +1

Query: 67  KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 246
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 247 LSASIQASLPSSEIYRQL 300
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 268 SLPSSEIYRQLVDSRHVSSDSFGVY 342
           +L  S I+R  + S HVSS S GVY
Sbjct: 2   TLLDSSIFRFRLSSLHVSSRSLGVY 26


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 332 KESEETWRESTNWR*ISEEG 273
           KE  E W  + NW+  SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828


>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 289 YRQLVDSRHVSSDSFGVYVKS*SLILHSFGLLV 387
           YRQLVD R ++ D F  + K+    LH   + V
Sbjct: 34  YRQLVDGRELTLDDFISHAKALRTHLHRLDINV 66


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 91  LVTHKELALKVSSIIGTRVYVFDPSCY 171
           +V H E  LKV  II T  Y  D S Y
Sbjct: 37  VVKHHEEFLKVCDIISTFTYQLDASIY 63


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 306 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 205
           ++Q A+ LG   RS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 214 RTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVY 342
           R +LKD     LS S+  SLPS     Q+  +  +S +    Y
Sbjct: 57  RKILKDVSLKRLSKSLDRSLPSENTIDQISFNHAMSEEDASGY 99


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 157 DPSCYFSTPPFDTVLYDNIRT 219
           DP+ Y    PFDTV  D + T
Sbjct: 706 DPAAYDKISPFDTVDIDGLTT 726


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 279 LRDLPPVGRFSPCFFRLLWSLRKILIPYSSQFW 377
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 231 QQNCS-SLCIYSSFSPFLRDLPPVGRFSP 314
           Q+ C+  LC YS  SP  R+LP    F P
Sbjct: 495 QRECTICLCEYSEESPLYRELPCHHIFHP 523


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 13  HPLIEDVVMATNQAIIDYKVKIADNNLVTHKELALKVSS 129
           H ++ED V   N+ +   K  +  NN     EL  K+ S
Sbjct: 637 HSILEDEVERFNEYLTRLKKDVMQNNKPKENELINKIRS 675


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 101 IRNWPSRFLLS*APESTSSIPPATFQ 178
           IR W S+F+ S A +    + P T Q
Sbjct: 128 IREWSSKFMNSKASQKQQMLSPETMQ 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,471,489
Number of Sequences: 5004
Number of extensions: 25873
Number of successful extensions: 91
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)