Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e06
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)          29   1.1  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_25816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                27   6.0  
SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.0  
SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)                 27   7.9  
SB_44508| Best HMM Match : YTH (HMM E-Value=1.4)                       27   7.9  

>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
          Length = 592

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +1

Query: 64  YKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLK---DN 234
           + + + DN L T   L +K+    G   +VFD         FDT+    +R   +   DN
Sbjct: 313 HSLTMIDNEL-TGDPLDIKMFEATG---WVFDEPGE-DNKKFDTIAPSTVRPKTREMTDN 367

Query: 235 KTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVK 348
           +  L    I+    SS++ R  V +R + SD   VYVK
Sbjct: 368 QVPLEVGIIRQFPFSSDVQRMTVITRILGSDHMDVYVK 405


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 16   PLIEDVVMATNQAIIDYKVKIADNNLVTHKE 108
            P + +V  A N+ +    V I DNN+V   E
Sbjct: 2469 PAVVEVTFAANEVVATISVPIVDNNIVEETE 2499


>SB_25816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 321 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQ 199
           R+MA+ +   + L GR     R RE++   VLK  P VV +
Sbjct: 30  RSMAQSFLSGISLDGRIMREPRTRERNDEKVLKPTPTVVTE 70


>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 628

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 1   PPPTHPLIEDVVMATNQAIIDYKVKIADNN 90
           P P HP+    ++        YK+ I DNN
Sbjct: 444 PKPCHPITNYYILYRMSTSTSYKIAITDNN 473


>SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 146 STSSIPPATFQLLPSIPYCTTTSGR 220
           +T SIP A     PS+PY TT   R
Sbjct: 323 TTGSIPTAITSSEPSVPYSTTRDSR 347


>SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 352 KILRRLQRSRKKHGENLPTGGRSRRKG-EKLE 260
           K LR+ Q ++ K  +  P GGRS R   EKL+
Sbjct: 713 KALRKAQETKGKLADGKPVGGRSGRPAIEKLQ 744


>SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)
          Length = 1083

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 157 DPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSA 255
           D   Y    P D V  +N+ TVL DNK   L++
Sbjct: 309 DLKWYVFDGPVDAVWIENMNTVLDDNKKLCLTS 341


>SB_44508| Best HMM Match : YTH (HMM E-Value=1.4)
          Length = 402

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
 Frame = +1

Query: 43  TNQAIIDYKVKIADNN-------LVTHKELALKVSSIIGTRVYV 153
           TN A+I +++ + D+N       LV  K   LKV    GT VYV
Sbjct: 261 TNFAMITHEIALEDDNGKDMFFPLVGSKPFCLKVGKYFGTVVYV 304


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,905,134
Number of Sequences: 59808
Number of extensions: 190516
Number of successful extensions: 524
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)