Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e06
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.5  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 7   PTHPLIEDVVMATNQAIIDYKV 72
           P H    D+V+ + Q   DYK+
Sbjct: 334 PLHDATRDLVLMSEQFEADYKL 355


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 7   PTHPLIEDVVMATNQAIIDYKV 72
           P H    D+V+ + Q   DYK+
Sbjct: 334 PLHDATRDLVLMSEQFEADYKL 355


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 140 PESTSSIPPATFQLLPSIPYCTTTSGRF 223
           P+S  S   A   L+PS P C      F
Sbjct: 391 PKSIKSGDAAIVMLVPSKPMCAEAFQEF 418


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -2

Query: 153  DVDSGAYDRRNLEGQFL 103
            DV  G YD     G FL
Sbjct: 1268 DVSEGIYDGSGANGSFL 1284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,230
Number of Sequences: 438
Number of extensions: 2223
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)