Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e06
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47170.1 68416.m05122 transferase family protein low similari...    32   0.17 
At3g47590.1 68416.m05181 esterase/lipase/thioesterase family pro...    30   0.53 
At4g29990.1 68417.m04266 light repressible receptor protein kina...    29   1.2  
At4g20200.1 68417.m02953 terpene synthase/cyclase family protein...    28   2.8  
At4g39820.1 68417.m05641 expressed protein                             27   3.7  
At1g51890.1 68414.m05849 leucine-rich repeat protein kinase, put...    27   3.7  
At4g08685.1 68417.m01430 pollen Ole e 1 allergen and extensin fa...    27   4.9  
At2g42460.1 68415.m05253 meprin and TRAF homology domain-contain...    27   4.9  
At2g09840.1 68415.m01018 hypothetical protein                          27   4.9  
At1g30170.1 68414.m03688 hypothetical protein contains Pfam prof...    26   8.6  

>At3g47170.1 68416.m05122 transferase family protein low similarity
           to 10-deacetylbaccatin III-10-O-acetyl transferase Taxus
           cuspidata GI:6746554; contains Pfam profile PF02458
           transferase family
          Length = 468

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 7   PTHPLIEDVVMATNQAIIDYK-VKIADNNLVTHKELALKVSSIIGTRVYVFDPSC 168
           PT  ++ +++  T++ I   K + I D NL   KE  +K++++     YV+   C
Sbjct: 242 PTEDMVREILNITSEDITKLKNIIIEDENLTNEKEKNMKITTVEVLAAYVWRARC 296


>At3g47590.1 68416.m05181 esterase/lipase/thioesterase family
           protein low similarity to cinnamoyl ester hydrolase CinI
           [Butyrivibrio fibrisolvens] GI:1622732; contains
           Interpro entry IPR000379
          Length = 309

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 148 YVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQ--LVDSRH 315
           +V   S Y+ T PF T  + N+R  +K+N+ +   A      PS  I  Q  ++ +RH
Sbjct: 10  FVPQDSPYYKTSPFPTSSFFNVRFPIKNNQISCNKAKNLRMDPSKGIQEQRIVIPNRH 67


>At4g29990.1 68417.m04266 light repressible receptor protein kinase
           identical to light repressible receptor protein kinase
           [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 876

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 130 IIGTRVYVFDPSCYFSTPPFDTVLYDNI-RTVLKDNKTALLSASIQASLPSSEIYRQLVD 306
           +I TR    +   +  TP FD  +  N+  +V+  N+TA+++  I  + PS  I+  LVD
Sbjct: 104 LIRTRFMYGNYDGFSKTPEFDLYIGANLWESVVLINETAIMTKEIIYTPPSDHIHVCLVD 163


>At4g20200.1 68417.m02953 terpene synthase/cyclase family protein
           5-epi-aristolochene synthase, Nicotiana tabacum,
           PATX:G505588
          Length = 604

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -2

Query: 285 LGGRERSLNRCREKSSFVVLKNRPDVVVQYGIEGRS*KVAGGIEDVDSGAY 133
           L G   S+ +   K +F  LK+RP +V    I+GR      G ED  S  Y
Sbjct: 464 LAGIFMSMGKMATKEAFEWLKSRPKLVQYLSIKGRLMNDLMGYEDDMSRGY 514


>At4g39820.1 68417.m05641 expressed protein 
          Length = 408

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 327 VGRNMARIYQLAVDLGGRERSLNRC--REKSSFVVLKNR 217
           VGRN A +Y +A D     R  ++C  R+ S  + + N+
Sbjct: 296 VGRNKALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNK 334


>At1g51890.1 68414.m05849 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 888

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +1

Query: 169 YFS-TPPF---DTVLYDNIRTVLKDNKTALLSASIQASLPSSEIY 291
           YFS TPPF   D  ++D I     DNK +LLS  +  S+ +S  Y
Sbjct: 194 YFSPTPPFLRYDEDVHDRIWIPFLDNKNSLLSTEL--SVDTSNFY 236


>At4g08685.1 68417.m01430 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 159

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 130 IIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDS 309
           ++  RVY       F TP    +    +R   KD +T  L+ S +A   S+  Y+ LV+ 
Sbjct: 28  VVRGRVYCDTCLAGFETPASTYISGAVVRLECKDRRTMELTYSHEARTDSTGSYKILVNE 87

Query: 310 RH 315
            H
Sbjct: 88  DH 89


>At2g42460.1 68415.m05253 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 441

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 16  PLIEDVVMATNQAIIDYKVKIADNNLVTHKEL 111
           PL E+  +  N+ II  +VK+A+   +T KE+
Sbjct: 286 PLQEEGFLENNKLIIRVEVKVAEEGYLTGKEM 317


>At2g09840.1 68415.m01018 hypothetical protein
          Length = 163

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 103 KELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNI 213
           +ELALK   I+   VYV  P+   +TP F    Y +I
Sbjct: 20  QELALKGHEIVMVHVYVSVPTSSSATPSFALNPYSSI 56


>At1g30170.1 68414.m03688 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 366

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 270 SPFLRDLPPVGRFSPCFFRLLWSLRKILIPYSSQFWVVSFIAL 398
           +P L  LPP+     C   ++W++     P   + WVV   +L
Sbjct: 107 NPKLLTLPPLNPLFSCQTDVIWNVAMSSCPDDDEDWVVGIKSL 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,819,518
Number of Sequences: 28952
Number of extensions: 143516
Number of successful extensions: 389
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)