Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e05
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   208   3e-54
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   206   1e-53
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    30   1.1  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    30   1.1  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    29   2.0  
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    29   2.6  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    29   2.6  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   4.5  
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s...    28   4.5  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    28   6.0  
At5g01010.1 68418.m00001 expressed protein                             28   6.0  
At3g12430.1 68416.m01548 expressed protein ; expression supporte...    28   6.0  
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g...    27   7.9  
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    27   7.9  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  208 bits (507), Expect = 3e-54
 Identities = 99/184 (53%), Positives = 122/184 (66%), Gaps = 2/184 (1%)
 Frame = +3

Query: 87  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 260
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 261 KEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXX 440
           K+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH   
Sbjct: 61  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120

Query: 441 XXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLK 620
                                  ARGH IE +PE+PLVV+D  + + KT  A+  L+++ 
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 180

Query: 621 AWSD 632
           A+ D
Sbjct: 181 AYDD 184


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  206 bits (502), Expect = 1e-53
 Identities = 99/181 (54%), Positives = 118/181 (65%), Gaps = 2/181 (1%)
 Frame = +3

Query: 96  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 269
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 270 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 449
           GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH      
Sbjct: 65  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVN 124

Query: 450 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWS 629
                               ARGH IE +PE+PLVV+D  + + KT  A+  L+++ A+ 
Sbjct: 125 MKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYD 184

Query: 630 D 632
           D
Sbjct: 185 D 185


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +2

Query: 386 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASLGCSRQ 565
           WW +V     LA+ APS   P  +  L  SR C   P ++S  + H   D+       R 
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 523

Query: 566 S 568
           S
Sbjct: 524 S 524


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +2

Query: 386 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASLGCSRQ 565
           WW +V     LA+ APS   P  +  L  SR C   P ++S  + H   D+       R 
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 522

Query: 566 S 568
           S
Sbjct: 523 S 523


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 111 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 257
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 402 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 283
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 402 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 283
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 162 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 257
           P+PF  K+P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 162 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 257
           P+PF  K+P +PD++   H  +  NS+  +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887


>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 592 CLVLLISWTLSATTKGSSGIFS 527
           CLVLL+S   +A TK  SGIF+
Sbjct: 9   CLVLLVSILRAAVTKPDSGIFT 30


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 390 HHDTCYRRHPDRTYEYHHHGHAEF 319
           HH   Y  H    Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At5g01010.1 68418.m00001 expressed protein
          Length = 409

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -1

Query: 287 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 156
           +TG+  +L+ + VG+P+VL    ++ I Q+   DG +E +RE  G
Sbjct: 203 ATGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243


>At3g12430.1 68416.m01548 expressed protein ; expression supported
           by MPSS
          Length = 238

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 165 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 52
           G W+H   SH+  ++  L VG+ +      Y+S + P++Y
Sbjct: 38  GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77


>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
           glycine-rich protein 18 (GRP18) PMID:11431566;
          Length = 228

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +3

Query: 255 VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAPTKPW 419
           + +  G + +AE   + + + ++P   G G    G+   G FGN   GG  F     W
Sbjct: 81  IRRRMGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGDISKW 138


>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 390 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 307
           HHD  +  H D  +++ HH H      H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,771,842
Number of Sequences: 28952
Number of extensions: 283195
Number of successful extensions: 1012
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)