Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e04
         (574 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   5.6  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    21   5.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   5.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   7.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   9.9  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 422 GCYCSLKGFYDWSSYGLSSNF 360
           GC C    F  W+ +   SNF
Sbjct: 53  GCLCIWSIFNKWNQFRSYSNF 73


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 180 LRKRTKKTVTSIEMTSTGNVKDETNN 257
           L+KR K     I + +TGN+   T+N
Sbjct: 10  LKKRLKIITIVILVVATGNIIHTTSN 35


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 420 ALPRTGISTTNHPTMTDTTRVTISPL 497
           ALP TG    N+P +     + + P+
Sbjct: 163 ALPPTGFLCNNYPPLPQVPPLPLPPI 188


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 128 HYHPKRQIHQTPQNHSQ 78
           +YHP+   H  P  H Q
Sbjct: 84  YYHPQLHSHHGPPIHHQ 100


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 128 HYHPKRQIHQTPQNHSQ 78
           +YHP+   H  P  H Q
Sbjct: 84  YYHPQLHSHHGPPIHHQ 100


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 128 HYHPKRQIHQTPQNHSQ 78
           +YHP+   H  P  H Q
Sbjct: 84  YYHPQLHSHHGPPIHHQ 100


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 128 HYHPKRQIHQTPQNHSQ 78
           +YHP+   H  P  H Q
Sbjct: 84  YYHPQLHSHHGPPIHHQ 100


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 197 FCPLPQLPALNLTSLY 150
           + PLPQ+P L L  ++
Sbjct: 174 YLPLPQVPPLPLPPIF 189


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,788
Number of Sequences: 336
Number of extensions: 1419
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)