Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19e04
(574 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 0.64
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 28 1.1
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 27 1.5
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 2.0
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 27 2.0
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|... 26 3.4
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 25 6.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 6.0
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 28.7 bits (61), Expect = 0.64
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 5/124 (4%)
Frame = +3
Query: 192 TKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQ----TTKALVQII 359
T +++ +T TG T+ TT++ + P T I + T + V +
Sbjct: 1025 TGTETSTVTVTPTG-----TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVT 1079
Query: 360 KVRAQTIRAPVIKALQRTVAALPRTGISTTNHPTMTDTTRVTISPL-VKTKTRNILVTIN 536
T V+ TV A ++ T T T+T+ VT++P T T +++
Sbjct: 1080 PTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTATGTTTVVINTP 1139
Query: 537 HTNG 548
T G
Sbjct: 1140 TTTG 1143
Score = 26.6 bits (56), Expect = 2.6
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 5/107 (4%)
Frame = +3
Query: 222 TSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQ----TTKALVQIIKVRAQTIRAP 389
TST V TT++ + P T I + T + V + T
Sbjct: 810 TSTVTVIPTGTTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGTTT 869
Query: 390 VIKALQRTVAALPRTGISTTNHPTMTDTTRVTISPL-VKTKTRNILV 527
V+ TV A ++ T T T+T+ VT++P T T +++
Sbjct: 870 VVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVI 916
Score = 26.6 bits (56), Expect = 2.6
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Frame = +3
Query: 192 TKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQ----TTKALVQII 359
T +++ +T TG T+ TT++ + P T I + T + V +
Sbjct: 849 TGTETSTVTVTPTG-----TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVT 903
Query: 360 KVRAQTIRAPVIKALQRTVAALPRTGISTTNHPTMTDTTRVTISPL-VKTKTRNILV 527
T V+ TV A ++ T T T+T+ VT++P T T +++
Sbjct: 904 PTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVI 960
Score = 26.6 bits (56), Expect = 2.6
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Frame = +3
Query: 192 TKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQ----TTKALVQII 359
T +++ +T TG T+ TT++ + P T I + T + V +
Sbjct: 893 TGTETSTVTVTPTG-----TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVT 947
Query: 360 KVRAQTIRAPVIKALQRTVAALPRTGISTTNHPTMTDTTRVTISPL-VKTKTRNILV 527
T V+ TV A ++ T T T+T+ VT++P T T +++
Sbjct: 948 PTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVI 1004
Score = 26.6 bits (56), Expect = 2.6
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Frame = +3
Query: 192 TKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQ----TTKALVQII 359
T +++ +T TG T+ TT++ + P T I + T + V +
Sbjct: 937 TGTETSTVTVTPTG-----TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVT 991
Query: 360 KVRAQTIRAPVIKALQRTVAALPRTGISTTNHPTMTDTTRVTISPL-VKTKTRNILV 527
T V+ TV A ++ T T T+T+ VT++P T T +++
Sbjct: 992 PTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVI 1048
Score = 26.6 bits (56), Expect = 2.6
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Frame = +3
Query: 192 TKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQ----TTKALVQII 359
T +++ +T TG T+ TT++ + P T I + T + V +
Sbjct: 981 TGTETSTVTVTPTG-----TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVT 1035
Query: 360 KVRAQTIRAPVIKALQRTVAALPRTGISTTNHPTMTDTTRVTISPL-VKTKTRNILV 527
T V+ TV A ++ T T T+T+ VT++P T T +++
Sbjct: 1036 PTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVVI 1092
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 440 YPGSWKGCYCSLKGFYDWSSYGLSSNFY 357
YP +W + SL+G SS SNFY
Sbjct: 120 YPSNWNDFFASLQGVIAASSQSEFSNFY 147
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 27.5 bits (58), Expect = 1.5
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Frame = +3
Query: 135 KTKNPVKTGQI*SGKLRKRTKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLI 314
K+K+P + + K R + +S +VKD N + +R PP N
Sbjct: 398 KSKHPTSIPEA-NNKTHIRHTSSTSSQSQKQAQDVKDTLNTSHVVQVRLPPYGDNARFCN 456
Query: 315 IKVLVQTTKALV--QIIKVR-AQTIRAPVIKALQRTVAALPRTGISTTNHPTM 464
I++ T A+V Q+ ++ + + + A TV L +T S +PT+
Sbjct: 457 IEISKTTRLAMVLNQVCWMKQLERFKYTLRVAGSDTVLPLDKTFSSLDGNPTL 509
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 129 KRKTKNPVKT--GQI*SGKLRKRTKKTVTSIEMTSTGN-VKDETNNARTTLMRE 281
++K K P K Q + + +K+ K+T +IEMTS G+ V + N +TL E
Sbjct: 58 EKKDKKPEKRKKDQKEASEKKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEE 111
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -3
Query: 239 YVSGRSHLDRSYGLFCP-LPQLPALNLTSLYRILRLPLHYHPKRQIHQTPQNHSQT-LQI 66
Y +HLD++YG F P +L + + + +HY + P H T +Q
Sbjct: 288 YTDYFAHLDKNYGFFYERWGDAPVHSLAASLFLNKSQIHYFEDFGYYHLPWYHCPTDVQS 347
Query: 65 HQTRR 51
H T R
Sbjct: 348 HATAR 352
>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 158 SLYRILRLPLHYHPKRQIH 102
S Y P HYHPKR +H
Sbjct: 150 SKYAPFNSPSHYHPKRFLH 168
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 186 KRTKKTVTSIEMTSTGNVKDETNNARTTLMREPP 287
K TKKT +S+ STG + T L PP
Sbjct: 221 KATKKTSSSVPKQSTGENTKKAVKLETPLTSTPP 254
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 6.0
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 191 PLPQLPALNLTSLYRILRLPLHYHPKRQIHQTP--QNHSQTLQIHQTRRP 48
P+ QLP N S Y + +PL + Q Q P Q H Q Q ++P
Sbjct: 148 PIQQLPLPNQASPY--IPVPLQQQQQSQPQQQPQQQQHQQPQQPQPPQQP 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,407
Number of Sequences: 5004
Number of extensions: 21993
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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