Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e04
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0181 + 13923658-13923661,13925518-13925681,13925879-139259...    30   1.5  
09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,963...    29   3.5  
05_01_0140 - 931039-931146,932659-932875,933117-933484,933644-93...    29   3.5  
06_03_1336 - 29424470-29424897,29425243-29429653                       28   6.1  
06_03_0707 + 23744103-23744280,23744460-23745499,23745728-23745739     28   6.1  
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722...    28   6.1  
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060     27   8.0  
02_04_0061 + 19361562-19363130                                         27   8.0  

>08_02_0181 +
           13923658-13923661,13925518-13925681,13925879-13925978,
           13926072-13926244,13926486-13927016
          Length = 323

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 491 TYGHSCGVGHGGMICGAYPGSWKGCYCSLKGFYDWSSYGLS 369
           TYG S G G+ G   G+Y G   G Y    G +  SSYG S
Sbjct: 245 TYGGSFGGGYAG---GSYAGGLGGAYGRDAGGFGGSSYGPS 282


>09_02_0470 +
           9629062-9629355,9629948-9630893,9630948-9631102,
           9631299-9631358,9633374-9633444,9633626-9633663,
           9633824-9633876,9633970-9635235,9635632-9635672,
           9636821-9636887
          Length = 996

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -3

Query: 242 LYVSGRSHLDRSYGLFCPLPQLPALNLTSLYRILRLPL 129
           L +SG S L +   LF  L  L  LNL+  +R+ RLPL
Sbjct: 751 LDLSGCSELQQLPHLFGNLTNLEDLNLSGCFRLERLPL 788


>05_01_0140 -
           931039-931146,932659-932875,933117-933484,933644-933733
          Length = 260

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
 Frame = +3

Query: 282 PPRKANMTSLIIKVLVQTTKALVQIIKVRAQTIRAPVIKALQRTVAALPR-TGISTTNHP 458
           PPR+   TS +    ++ T  +  +    A ++ A  +     T   +   T  +TT   
Sbjct: 53  PPRRTVHTSFLPMAAMEATVTVTAVTMAVAASLAAITMATAAITANTMEAITDTTTTMAA 112

Query: 459 TM---TDTTRVTISPLVKTKTRNILVTIN 536
           +M   TDTT  T + +  T    ++ TIN
Sbjct: 113 SMAVITDTTATTAASMAVTTAVTMVATIN 141


>06_03_1336 - 29424470-29424897,29425243-29429653
          Length = 1612

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 467 GHGGMICGAYPGSWKGCYCSLKGFYDWSSYGLSSN 363
           GHGG  C     SW G   S+KG    S +GL  N
Sbjct: 874 GHGGATCP----SWLGFNLSIKGLQSLSLHGLDWN 904


>06_03_0707 + 23744103-23744280,23744460-23745499,23745728-23745739
          Length = 409

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 248 FVLYVSGRSHLDRSYGLFCPLPQLPALNLTSLY 150
           F+ Y+S   H+D +Y LF P P +   N TSL+
Sbjct: 248 FLAYISDPEHIDINYALFKPNPGIVDPN-TSLH 279


>03_06_0090 +
           31570588-31570710,31570962-31571080,31572215-31572284,
           31572544-31573492,31574789-31575699
          Length = 723

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -3

Query: 257 VVGFVLYVSGRSHLDRSYGLFCPLP----QLPALNLTSLYRILRLPLHYHPKRQIHQTPQ 90
           +V  V +V+G  H+ R   L   LP    +LP L L ++  +L + L   P+R +  +P+
Sbjct: 508 LVDVVQHVAGVRHVPRRAYLLVQLPHLLVRLPPLRLVAVLLLLLMILPPRPRRSLECSPR 567


>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
          Length = 794

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +3

Query: 216 EMTSTGNVKDETNNARTTLMREPPRKANMTS 308
           E  +TGN+ +E N+ +  +++EP  + N+++
Sbjct: 449 ESAATGNIIEEKNDVQLHVVKEPEEEVNVSA 479


>02_04_0061 + 19361562-19363130
          Length = 522

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -3

Query: 512 CLCLY*RTYGHSCG---VGHGGMICGAYPGSWKGCYCSLK 402
           C CL   T G  C    VG GG +CG   G   G Y  ++
Sbjct: 330 CACLANATDGSGCAAANVGGGGGLCGRTGGEVGGLYWEVR 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,117,101
Number of Sequences: 37544
Number of extensions: 147305
Number of successful extensions: 522
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)