Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e04
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)              28   4.7  
SB_42213| Best HMM Match : ABC_tran (HMM E-Value=4.30058e-42)          28   4.7  
SB_21528| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_41305| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)                    27   8.2  
SB_7761| Best HMM Match : Drf_FH1 (HMM E-Value=8.2)                    27   8.2  
SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.2  
SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)                      27   8.2  

>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
 Frame = +3

Query: 207 TSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLI---IKVLVQTTKALVQIIKVRAQT 377
           TS+   +T  V      ++    R+ P+   MTS +     V VQ + A  ++  ++  +
Sbjct: 45  TSVPTVTTAEVSSAETTSKAESPRQQPQAVTMTSDVSSFSSVHVQQSPAFSKMRSLQLTS 104

Query: 378 IRAPVIKALQRTVAALPRTGISTTNHPTMTDTTRVTISPLVKTKTRN 518
           +  P I+A  R +        ST++ P   D T   I+    T TR+
Sbjct: 105 VSEP-IQANPRKMLVRSPAVRSTSSPPLPPDDTSEVITHSCVTNTRS 150


>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/117 (19%), Positives = 35/117 (29%)
 Frame = +3

Query: 192 TKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQTTKALVQIIKVRA 371
           T     ++ +T T      T  A  T        A  T+        T  A         
Sbjct: 298 TATLAVTVTVTETAAAATATVTATVTTTTTATATATTTATATATTTATATATATATATAT 357

Query: 372 QTIRAPVIKALQRTVAALPRTGISTTNHPTMTDTTRVTISPLVKTKTRNILVTINHT 542
            T+ A        T        ++ T   T+T T  VT++      T  + VT+  T
Sbjct: 358 ATVTATATATATVTATVTVTVTVTATATATVTATATVTVTAAAARATATVTVTVTVT 414


>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 30/122 (24%), Positives = 49/122 (40%)
 Frame = +3

Query: 171 SGKLRKRTKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQTTKALV 350
           S  L + T     +I + +T  +    N   ++L        N T  I   L +TT +  
Sbjct: 505 SPSLNETTSSAYETIAVNATPTISPSPNGTTSSLYETID--VNATPTISPSLNETTSSAY 562

Query: 351 QIIKVRAQTIRAPVIKALQRTVAALPRTGISTTNHPTMTDTTRVTISPLVKTKTRNILVT 530
           + I V A    +PV K      +A     ++ T  PT++ +   T S L +T   N   T
Sbjct: 563 ETIAVNATPTISPVTK--WDNYSAYETIAVNAT--PTISPSPNGTTSSLYETIDVNATPT 618

Query: 531 IN 536
           I+
Sbjct: 619 IS 620


>SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)
          Length = 635

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 381 RAPVIKA-LQRTVAALPRTGISTTNHPTMTDTTRVTISPL 497
           R+P+  A  QR V  LP  GIS T HP++        +PL
Sbjct: 497 RSPLHPAGSQRHVCTLPSRGISQTRHPSIPRDLTGAFTPL 536


>SB_42213| Best HMM Match : ABC_tran (HMM E-Value=4.30058e-42)
          Length = 1264

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
 Frame = +3

Query: 201  TVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVL-VQTTKALVQIIKVRAQT 377
            T+T+   T T  +      A T   +      N+T  +I ++   TT  ++ II +    
Sbjct: 1057 TITTTTTTITVTITITITTAITITTKTSIAIINITISVITIINATTTIPVIAIIIIYITI 1116

Query: 378  IRAPVIKALQRTVAALPRTGISTTNHPTMTDTTRVTI-SPLVKTKTRNILVTINHT 542
            I    I  +    A+LP++     +H   T T   TI S  + T    I+   N T
Sbjct: 1117 INITAI-TITTPKASLPQSPHHHQHHNHRTTTASTTIDSTTIATTNSTIITNTNST 1171


>SB_21528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -3

Query: 521 NVSCLCLY*RTYG--HSCGVGHGGMICGAYPGSWKGCYCSLKGFYDW 387
           N  CL  Y + Y   H   V  G ++ G Y GS  G +   K FYD+
Sbjct: 241 NPLCLVCYRKRYRLHHRYSVCRGTLMIGQYQGSVGGGFDQSKLFYDY 287


>SB_41305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 432 TGISTTNHPTMTDTTRVTISPLVKTKTRNILVTINHTNGHAMT 560
           T  +TTN+ TMT TT    +  + T   N  +T   TN +AMT
Sbjct: 9   TMANTTNNNTMTTTTN---NNAMTTTNNNKAMTTTTTNNNAMT 48


>SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 302 HVCFSWRLPHQSRTSVVGFVLYVSGRSHLDRSYGLFCPLPQLPALNLTSLYRILRLPLHY 123
           H   S  LP  S  S++  +  +    H  R Y    PL  LP+L +T +  ++   LH+
Sbjct: 241 HYASSSSLP--SLCSII-IITVIMHHHHHYRHYASSSPLSALPSLCITLIITVIMHRLHH 297

Query: 122 H 120
           H
Sbjct: 298 H 298


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 302 HVCFSWRLPHQSRTSVVGFVLYVSGRSHLDRSYGL 198
           H C SW LP   RT V G  L    R+H+   Y L
Sbjct: 220 HTC-SWALPAHYRTHVPGRYLLTHFRAHVPGHYPL 253


>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 122 HPKRQIHQTPQNHSQTLQIHQT 57
           HP   +H TP NH++TL  HQT
Sbjct: 580 HPSN-VH-TPDNHTKTLSTHQT 599


>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
          Length = 454

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 233 SGRSHLDRSYGLFCPLPQLPALNLTSLYRILRLPL 129
           SG S  D ++  F PL  LP+L     Y ILR PL
Sbjct: 49  SGPSTFDTTF--FVPLYLLPSLLYVPFYNILRAPL 81


>SB_7761| Best HMM Match : Drf_FH1 (HMM E-Value=8.2)
          Length = 233

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
 Frame = +3

Query: 198 KTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQTTKALVQIIKVRAQT 377
           KT    + TST      T   +TT  +E       T      +V  T   ++       T
Sbjct: 54  KTTKKPDNTSTRQRPVTTAQLKTTAAQETTVAPETTVAPETTVVPETTVALETTMAPETT 113

Query: 378 IRAPVIKALQRTVAALPRTGISTTNHPTMT---DTTRVTISPLVKTKT 512
           + A    A   TVAA       TT  P  T   DTT V  + LV   T
Sbjct: 114 VAAESTDAPDTTVAAETTASAETTVAPETTAAPDTTLVPDTTLVPDTT 161


>SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +3

Query: 177 KLRKRTKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQTTKALVQI 356
           K++ R  K +T      T   K +T   +    +   +         K  VQT K+ VQI
Sbjct: 100 KVQTRKSKVLTRKSKVQTRKCKVQTCKCKVQTRKSKKQTRKCKVQTRKCKVQTCKSKVQI 159

Query: 357 IKVRAQTIRAPV 392
            K + QT ++ +
Sbjct: 160 RKSKVQTRKSKI 171


>SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)
          Length = 341

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +3

Query: 177 KLRKRTKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQTTKALVQI 356
           K++ R  K +T      T   K +T   +    +   +         K  VQT K+ VQI
Sbjct: 100 KVQTRKSKVLTRKSKVQTRKCKVQTCKCKVQTRKSKKQTRKCKVQTRKCKVQTCKSKVQI 159

Query: 357 IKVRAQTIRAPV 392
            K + QT ++ +
Sbjct: 160 RKSKVQTRKSKI 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,459,664
Number of Sequences: 59808
Number of extensions: 179877
Number of successful extensions: 769
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)