Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19e04
(574 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC105031-1|AAI05032.1| 79|Homo sapiens keratin associated prot... 31 3.8
BC105029-1|AAI05030.1| 79|Homo sapiens keratin associated prot... 31 3.8
AB096960-1|BAE46375.1| 79|Homo sapiens keratin associated prot... 31 3.8
BC110818-1|AAI10819.1| 646|Homo sapiens CHD7 protein protein. 29 8.8
BC080627-1|AAH80627.1| 628|Homo sapiens CHD7 protein protein. 29 8.8
BC068000-1|AAH68000.1| 594|Homo sapiens CHD7 protein protein. 29 8.8
BC053890-1|AAH53890.1| 594|Homo sapiens CHD7 protein protein. 29 8.8
BC046635-1|AAH46635.1| 48|Homo sapiens KRTAP21-1 protein protein. 29 8.8
BC014681-1|AAH14681.1| 637|Homo sapiens Unknown (protein for IM... 29 8.8
AL662867-3|CAI17720.1| 152|Homo sapiens psoriasis susceptibilit... 29 8.8
AL662844-3|CAI18324.1| 152|Homo sapiens psoriasis susceptibilit... 29 8.8
AK123158-1|BAC85544.1| 572|Homo sapiens protein ( Homo sapiens ... 29 8.8
AF484418-1|AAO49375.1| 152|Homo sapiens psoriasis susceptibilit... 29 8.8
AB031479-1|BAA88130.1| 152|Homo sapiens SEEK1 protein. 29 8.8
>BC105031-1|AAI05032.1| 79|Homo sapiens keratin associated protein
21-1 protein.
Length = 79
Score = 30.7 bits (66), Expect = 3.8
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -3
Query: 488 YGHSCGVGHGGMICGAYPGSWKGCYC 411
YG+SCG G G CG GS GC C
Sbjct: 6 YGNSCGYGSG---CGCGYGSGSGCGC 28
Score = 29.5 bits (63), Expect = 8.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 485 GHSCGVGHGGMICGAYPGSWKGCYCS 408
G+ CG G G CG P ++ CY S
Sbjct: 53 GYGCGYGSGSGYCGYRPFCFRRCYSS 78
>BC105029-1|AAI05030.1| 79|Homo sapiens keratin associated protein
21-1 protein.
Length = 79
Score = 30.7 bits (66), Expect = 3.8
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -3
Query: 488 YGHSCGVGHGGMICGAYPGSWKGCYC 411
YG+SCG G G CG GS GC C
Sbjct: 6 YGNSCGYGSG---CGCGYGSGSGCGC 28
Score = 29.5 bits (63), Expect = 8.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 485 GHSCGVGHGGMICGAYPGSWKGCYCS 408
G+ CG G G CG P ++ CY S
Sbjct: 53 GYGCGYGSGSGYCGYRPFCFRRCYSS 78
>AB096960-1|BAE46375.1| 79|Homo sapiens keratin associated protein
protein.
Length = 79
Score = 30.7 bits (66), Expect = 3.8
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -3
Query: 488 YGHSCGVGHGGMICGAYPGSWKGCYC 411
YG+SCG G G CG GS GC C
Sbjct: 6 YGNSCGYGSG---CGCGYGSGSGCGC 28
Score = 29.5 bits (63), Expect = 8.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 485 GHSCGVGHGGMICGAYPGSWKGCYCS 408
G+ CG G G CG P ++ CY S
Sbjct: 53 GYGCGYGSGSGYCGYRPFCFRRCYSS 78
>BC110818-1|AAI10819.1| 646|Homo sapiens CHD7 protein protein.
Length = 646
Score = 29.5 bits (63), Expect = 8.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 128 HYHPKRQIHQTPQNHSQTLQIHQ 60
H+ P Q+H +PQN Q + +HQ
Sbjct: 533 HHQPWAQLHPSPQNTPQKVPVHQ 555
>BC080627-1|AAH80627.1| 628|Homo sapiens CHD7 protein protein.
Length = 628
Score = 29.5 bits (63), Expect = 8.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 128 HYHPKRQIHQTPQNHSQTLQIHQ 60
H+ P Q+H +PQN Q + +HQ
Sbjct: 557 HHQPWAQLHPSPQNTPQKVPVHQ 579
>BC068000-1|AAH68000.1| 594|Homo sapiens CHD7 protein protein.
Length = 594
Score = 29.5 bits (63), Expect = 8.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 128 HYHPKRQIHQTPQNHSQTLQIHQ 60
H+ P Q+H +PQN Q + +HQ
Sbjct: 527 HHQPWAQLHPSPQNTPQKVPVHQ 549
>BC053890-1|AAH53890.1| 594|Homo sapiens CHD7 protein protein.
Length = 594
Score = 29.5 bits (63), Expect = 8.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 128 HYHPKRQIHQTPQNHSQTLQIHQ 60
H+ P Q+H +PQN Q + +HQ
Sbjct: 527 HHQPWAQLHPSPQNTPQKVPVHQ 549
>BC046635-1|AAH46635.1| 48|Homo sapiens KRTAP21-1 protein protein.
Length = 48
Score = 29.5 bits (63), Expect = 8.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 485 GHSCGVGHGGMICGAYPGSWKGCYCS 408
G+ CG G G CG P ++ CY S
Sbjct: 22 GYGCGCGSGSGYCGYRPFCFRRCYSS 47
>BC014681-1|AAH14681.1| 637|Homo sapiens Unknown (protein for
IMAGE:3866722) protein.
Length = 637
Score = 29.5 bits (63), Expect = 8.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 128 HYHPKRQIHQTPQNHSQTLQIHQ 60
H+ P Q+H +PQN Q + +HQ
Sbjct: 527 HHQPWAQLHPSPQNTPQKVPVHQ 549
>AL662867-3|CAI17720.1| 152|Homo sapiens psoriasis susceptibility 1
candidate 1 protein.
Length = 152
Score = 29.5 bits (63), Expect = 8.8
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -3
Query: 227 RSHLDRSYGLFCPLPQLPALNLTSLYRILRLPLHYHPKRQIHQTPQNH 84
+SH R+ G P Q P L T P H +P R H P NH
Sbjct: 7 KSHSQRALGTQTPALQGPQLLNTDPSSEETRPPHVNPDRLCHMEPANH 54
>AL662844-3|CAI18324.1| 152|Homo sapiens psoriasis susceptibility 1
candidate 1 protein.
Length = 152
Score = 29.5 bits (63), Expect = 8.8
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -3
Query: 227 RSHLDRSYGLFCPLPQLPALNLTSLYRILRLPLHYHPKRQIHQTPQNH 84
+SH R+ G P Q P L T P H +P R H P NH
Sbjct: 7 KSHSQRALGTQTPALQGPQLLNTDPSSEETRPPHVNPDRLCHMEPANH 54
>AK123158-1|BAC85544.1| 572|Homo sapiens protein ( Homo sapiens
cDNA FLJ41163 fis, clone BRACE2039734. ).
Length = 572
Score = 29.5 bits (63), Expect = 8.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 128 HYHPKRQIHQTPQNHSQTLQIHQ 60
H+ P Q+H +PQN Q + +HQ
Sbjct: 289 HHQPWAQLHPSPQNTPQKVPVHQ 311
>AF484418-1|AAO49375.1| 152|Homo sapiens psoriasis susceptibility 1
candidate 1 protein.
Length = 152
Score = 29.5 bits (63), Expect = 8.8
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -3
Query: 227 RSHLDRSYGLFCPLPQLPALNLTSLYRILRLPLHYHPKRQIHQTPQNH 84
+SH R+ G P Q P L T P H +P R H P NH
Sbjct: 7 KSHSQRALGTQTPALQGPQLLNTDPSSKETRPPHVNPDRLCHMEPANH 54
>AB031479-1|BAA88130.1| 152|Homo sapiens SEEK1 protein.
Length = 152
Score = 29.5 bits (63), Expect = 8.8
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -3
Query: 227 RSHLDRSYGLFCPLPQLPALNLTSLYRILRLPLHYHPKRQIHQTPQNH 84
+SH R+ G P Q P L T P H +P R H P NH
Sbjct: 7 KSHSQRALGTQTPALQGPQLLNTDPSSKETRPPHVNPDRLCHMEPANH 54
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,970,248
Number of Sequences: 237096
Number of extensions: 791748
Number of successful extensions: 1966
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1966
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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