Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19e04
(574 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 32 0.33
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 31 0.77
U80453-11|AAN63452.2| 503|Caenorhabditis elegans Hypothetical p... 31 0.77
U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical p... 31 0.77
U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 3.1
Z81077-12|CAH19097.1| 316|Caenorhabditis elegans Hypothetical p... 28 4.1
U28731-8|AAA68300.2| 113|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z81057-1|CAB02914.2| 460|Caenorhabditis elegans Hypothetical pr... 28 5.4
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 28 5.4
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 28 5.4
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 28 5.4
AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical ... 27 7.2
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF038619-1|AAB92076.2| 468|Caenorhabditis elegans Hypothetical ... 27 9.5
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = +3
Query: 336 TKALVQIIKVRAQTIRAPVIKALQRTVAALPRT-GISTTNHPTMTDT-TRVTISPLVKTK 509
T ++ AQT AP++ T + T G++TT T T +P T
Sbjct: 216 TSTAPEVTTTVAQTTTAPIVTTANTTTQGVTTTAGVTTTVTRAQNSTLAATTTAPSTNTT 275
Query: 510 TRNILVTINHTNGHAMTAENT 572
T+ + T+ T TA+N+
Sbjct: 276 TQGVTTTVGKTT-TVTTAQNS 295
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 30.7 bits (66), Expect = 0.77
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +3
Query: 198 KTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQTTKALVQIIKVRAQT 377
+T T+ S G ++ + A T + P + K ++ T++ +I +A T
Sbjct: 73 ETTTNPAPMSAG-IQTRGSYANTKSLPVPDLPPSTLKTTTKPVITATRSTARITTTKAST 131
Query: 378 IR---APVIKALQRTVAALPRTGISTTNHPTMTDTTRVTISPLVKT 506
+ AP + RT++ T +TT+ PT T T R T S +T
Sbjct: 132 LEPPEAPTKASTARTIS----TTETTTSPPTTTVTPRTTRSSTART 173
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/117 (21%), Positives = 38/117 (32%)
Frame = +3
Query: 183 RKRTKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQTTKALVQIIK 362
R + T T + + ART E T++ + +T V K
Sbjct: 119 RSTARITTTKASTLEPPEAPTKASTARTISTTETTTSPPTTTVTPRTTRSSTARTVATTK 178
Query: 363 VRAQTIRAPVIKALQRTVAALPRTGISTTNHPTMTDTTRVTISPLVKTKTRNILVTI 533
T+R T+A T +TT+ P T T T S T + T+
Sbjct: 179 TSPSTLRTTTKPPTTTTIATTRITTKTTTSPPPFTTTVTTTTSAARTIATTTPIKTV 235
>U80453-11|AAN63452.2| 503|Caenorhabditis elegans Hypothetical
protein C23H3.9a protein.
Length = 503
Score = 30.7 bits (66), Expect = 0.77
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +3
Query: 396 KALQRTVAALPRTGISTTNHPTMTD--TTRVTISPLVKTKTRNILVTINHTNGHAMTAEN 569
KALQ+T + T STT PT T TT T +PL T T T T E
Sbjct: 192 KALQKT-STTQETTTSTTAQPTTTTTATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEP 250
Query: 570 T 572
T
Sbjct: 251 T 251
>U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical
protein C23H3.9b protein.
Length = 489
Score = 30.7 bits (66), Expect = 0.77
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +3
Query: 396 KALQRTVAALPRTGISTTNHPTMTD--TTRVTISPLVKTKTRNILVTINHTNGHAMTAEN 569
KALQ+T + T STT PT T TT T +PL T T T T E
Sbjct: 188 KALQKT-STTQETTTSTTAQPTTTTTATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEP 246
Query: 570 T 572
T
Sbjct: 247 T 247
>U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical
protein C23H3.9d protein.
Length = 432
Score = 30.7 bits (66), Expect = 0.77
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +3
Query: 396 KALQRTVAALPRTGISTTNHPTMTD--TTRVTISPLVKTKTRNILVTINHTNGHAMTAEN 569
KALQ+T + T STT PT T TT T +PL T T T T E
Sbjct: 131 KALQKT-STTQETTTSTTAQPTTTTTATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEP 189
Query: 570 T 572
T
Sbjct: 190 T 190
>Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical
protein B0393.6 protein.
Length = 405
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +3
Query: 249 TNNARTTLMREPPRKANMTSLIIKVLVQTTKALVQIIKVRAQTIRAPVIKALQRTVAALP 428
T+++ T P + +S +++ TTK +Q I+ +T RAP I ++ V L
Sbjct: 306 TSSSAKTAGLSPTHNFSRSSTSLRIPTPTTK--IQKIQNFFETTRAPRISRIRMGVTDLV 363
Query: 429 RTGISTTNHPTMTDT 473
T HP T T
Sbjct: 364 NTPRRPMPHPLFTST 378
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = +3
Query: 303 TSLIIKVLVQTTKALVQIIKVRAQTIRAPVIKALQRTVAALPRTGISTTNHPTMTDTTRV 482
T+ I T +A ++ T +AP Q T +TT PT TT
Sbjct: 317 TTTEIPTTTTTEEATTTTEEITTTTTKAPTTTTTQSTTTTTQLPTTTTTTEPT---TTTT 373
Query: 483 TISPLVKTK 509
T+ PL + +
Sbjct: 374 TVDPLAENE 382
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Frame = -3
Query: 488 YGHSCGVGHGGMICGAY---PGSWKGCYCS 408
YG G GHGG + G Y G GC CS
Sbjct: 105 YGGGHGGGHGGAVGGGYGGGGGGGGGCQCS 134
>Z81077-12|CAH19097.1| 316|Caenorhabditis elegans Hypothetical
protein F36A2.14 protein.
Length = 316
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 129 KRKTKNPVKTGQI*SGKLRKRTKKTVTSIEMTSTGNVKDETNNART 266
K+K K +K + SG RK +KKT ++ +S K +T
Sbjct: 85 KKKKKERMKKSKDESGSSRKNSKKTAEDMDQSSDDTTKPAEETKKT 130
>U28731-8|AAA68300.2| 113|Caenorhabditis elegans Hypothetical
protein F12A10.7 protein.
Length = 113
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 473 GVGHGGMICGAYPGSWKGCYCSLKGFYDWSSYGLSSN 363
G G+GG G Y G + G Y G W SY S+
Sbjct: 66 GGGYGGGYGGGYGGGYGGRYGGNYGSSSWGSYSSYSS 102
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 488 YGHSCGVGHGGMICGAYPGSWKGCYCSLK-GFY-DWSSYGLSS 366
YG G G+GG G Y G + G Y S G Y +SS G SS
Sbjct: 65 YGGGYGGGYGGGYGGGYGGRYGGNYGSSSWGSYSSYSSGGYSS 107
>Z81057-1|CAB02914.2| 460|Caenorhabditis elegans Hypothetical
protein F10D11.2 protein.
Length = 460
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 167 NLTSLYRILRLPLHYHPKRQIHQTPQNH-SQTLQ 69
N L+R LP YH R+IHQ +H S TL+
Sbjct: 425 NHEPLHRSAFLPPQYHKDRRIHQQMDSHLSDTLR 458
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 177 KLRKRTKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLI 314
+L + K TVT+ + T + ++ + +T ++ P+K N T+ I
Sbjct: 282 ELNREQKATVTATKYPRTDFIMEDYHRPQTQILAPAPKKPNSTTRI 327
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform a protein.
Length = 1004
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 177 KLRKRTKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLI 314
+L + K TVT+ + T + ++ + +T ++ P+K N T+ I
Sbjct: 237 ELNREQKATVTATKYPRTDFIMEDYHRPQTQILAPAPKKPNSTTRI 282
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform c protein.
Length = 1099
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 177 KLRKRTKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLI 314
+L + K TVT+ + T + ++ + +T ++ P+K N T+ I
Sbjct: 332 ELNREQKATVTATKYPRTDFIMEDYHRPQTQILAPAPKKPNSTTRI 377
>AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical
protein F56H1.3 protein.
Length = 1174
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 429 RTGISTTNHPTMTDTTRVTISPLVKTKTRNILVTINHTNGHAMT 560
R GI N+ T VT++P+++ K + L+ + HA+T
Sbjct: 660 RNGIRVFNNRQSRSTKNVTVNPVLQFKNTHFLIQNLGLSVHALT 703
>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
protein K07E3.1 protein.
Length = 1061
Score = 27.1 bits (57), Expect = 9.5
Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 6/137 (4%)
Frame = +3
Query: 126 VKRKTKNPVKT---GQI*SGKLRKRTKKTVTSIEMTSTGNVKDETNNARTTLMREPPRKA 296
V +NP + G + SG ++ E T+ + + ++ A +P
Sbjct: 410 VASSKRNPTSSDVFGNVSSGSRNNSEDNKPSTSESTTIASDSNASDEALANTDTDPSIAE 469
Query: 297 NMTSLIIK-VLVQTTKALVQIIKVRAQTIRAPVIKALQRTVAALPRTGISTTNHPT--MT 467
+ L + A ++ + APV++A +TVA + + G+ST + ++
Sbjct: 470 STHQLTFPPITTDFVSAKTALVVDTSDQGTAPVVQAAYKTVAEVVQQGLSTDSQSAKQVS 529
Query: 468 DTTRVTISPLVKTKTRN 518
ISP K+ N
Sbjct: 530 GIGHTRISPAEKSSGAN 546
>AF038619-1|AAB92076.2| 468|Caenorhabditis elegans Hypothetical
protein F56A11.4 protein.
Length = 468
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -3
Query: 458 GMICGAYPGSWKGCYCSLKGFYDWSSYGLSSNFYDLN 348
G + G +PG W+ +C F D+S+ ++N
Sbjct: 19 GELSGRFPGEWRENHCLSDSFSDFSNDNNKFQMIEIN 55
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,870,185
Number of Sequences: 27780
Number of extensions: 127091
Number of successful extensions: 530
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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