Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e04
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.53 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.7  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 219 MTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQTTKALVQIIKVR-AQTIRAPVI 395
           MT T  +++ TN+ R   M  PP + N     I  +   TKA +  IK   A+T++  V 
Sbjct: 8   MTQTELLQELTNDCRYDKMTRPPGEINS----INPINVYTKAYIYTIKSNMAKTLQFDVH 63

Query: 396 KALQ 407
             LQ
Sbjct: 64  MMLQ 67


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -3

Query: 158 SLYRILRLPLHYHPKRQIHQTPQNHSQTL 72
           + YRI +  + Y+   ++HQ P N  + +
Sbjct: 417 AFYRIYKRIIDYYHSYKMHQKPYNKDEII 445


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -3

Query: 158 SLYRILRLPLHYHPKRQIHQTPQNHSQTL 72
           + YRI +  + Y+   ++HQ P N  + +
Sbjct: 417 AFYRIYKRIIDYYHSYKMHQKPYNKDEII 445


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 200 LFCPLPQLPALNLTSLYRILRL 135
           LF P  +LPA  LT+++  L L
Sbjct: 63  LFTPGQELPARGLTAVFLGLNL 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,132
Number of Sequences: 438
Number of extensions: 1428
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)