Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e04
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05680.1 68416.m00634 expressed protein                             31   0.41 
At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family pr...    29   1.7  
At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family pr...    29   1.7  
At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR...    29   2.2  
At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta...    29   2.2  
At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta...    29   2.2  
At2g24690.1 68415.m02948 transcriptional factor B3 family protei...    28   3.8  
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t...    28   5.1  
At4g14920.1 68417.m02292 PHD finger transcription factor, putative     27   8.9  
At1g78960.1 68414.m09206 lupeol synthase, putative / 2,3-oxidosq...    27   8.9  
At1g72300.1 68414.m08358 leucine-rich repeat transmembrane prote...    27   8.9  

>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 188  LPQLPALNLTSLYRILRLPLHYHPKRQIHQTPQNHSQTLQ 69
            +PQLP++ L+ L R ++ P H  P  QI Q P     ++Q
Sbjct: 1918 IPQLPSMQLSQLQRPMQPPQHVRPPIQISQ-PSEQGVSMQ 1956


>At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 347

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = +3

Query: 204 VTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQTTKALVQIIKVRAQTIR 383
           VT+ ++ ST  ++D+T N +T    E  ++A       K    TT + +   KVR + +R
Sbjct: 229 VTTPQIIST-RLEDKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLR 287

Query: 384 APVIKALQRTVAALPRT 434
              I +LQ+ V+   +T
Sbjct: 288 -DQITSLQQLVSPFGKT 303


>At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 393

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = +3

Query: 204 VTSIEMTSTGNVKDETNNARTTLMREPPRKANMTSLIIKVLVQTTKALVQIIKVRAQTIR 383
           VT+ ++ ST  ++D+T N +T    E  ++A       K    TT + +   KVR + +R
Sbjct: 229 VTTPQIIST-RLEDKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLR 287

Query: 384 APVIKALQRTVAALPRT 434
              I +LQ+ V+   +T
Sbjct: 288 -DQITSLQQLVSPFGKT 303


>At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1046

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 227 RSHLDRSYGLFCPLPQLPALNLTSLYRILRLP 132
           RS+L+  +G   PLP L  +NL   YR+  +P
Sbjct: 598 RSNLELLWGGIEPLPNLKIINLNRSYRLKEIP 629


>At2g05250.1 68415.m00553 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 446 GAYPGSWKGCYCSLKGFYDWSSY 378
           G YPG   G   S  G Y+WSSY
Sbjct: 261 GHYPGQGHGYDYSTNGSYEWSSY 283


>At2g05230.1 68415.m00551 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 446 GAYPGSWKGCYCSLKGFYDWSSY 378
           G YPG   G   S  G Y+WSSY
Sbjct: 261 GHYPGQGHGYDYSTNGSYEWSSY 283


>At2g24690.1 68415.m02948 transcriptional factor B3 family protein
           low similarity to reproductive meristem protein 1
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 682

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 22/70 (31%), Positives = 35/70 (50%)
 Frame = +3

Query: 105 NLTLRVIVKRKTKNPVKTGQI*SGKLRKRTKKTVTSIEMTSTGNVKDETNNARTTLMREP 284
           ++TL  I + +T  PV + +  SGK +    K   SI+  S+GN+  +  N R    + P
Sbjct: 261 SITLEPIWEDRT--PVLSIKSSSGKGQSEFSKESLSIK-PSSGNMTKKVENNREASRKYP 317

Query: 285 PRKANMTSLI 314
           PR    +S I
Sbjct: 318 PRSRESSSAI 327


>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
           RNA-binding protein from [Solanum tuberosum]
           GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
           sylvestris] GI:624925; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 309

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 488 YGHSCGVGHGGMICGAYPGSWKGCY 414
           YG + G G+GG   G Y GS  G Y
Sbjct: 163 YGGNSGGGYGGNAAGGYGGSGAGGY 187


>At4g14920.1 68417.m02292 PHD finger transcription factor, putative
          Length = 1055

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +3

Query: 42  SLRTPSLMNLKGLTMILRRLMNLTLRVIVKRKTKNPVKTGQI*SGKLRKRTKKTVTSIEM 221
           +L+T  L  L     I    + L + + +K K +N        SG+L+KR  +     +M
Sbjct: 263 TLKTEKLPKLPPPARIQSNGLKLPMSLTMKSKGQNQDSEDSDSSGRLQKRIIQPHKPSQM 322

Query: 222 TSTGNVK 242
           +STG  K
Sbjct: 323 SSTGGEK 329


>At1g78960.1 68414.m09206 lupeol synthase, putative /
           2,3-oxidosqualene-triterpenoid cyclase, putative similar
           to lupeol synthase GI:1762150 from [Arabidopsis
           thaliana], 2,3-oxidosqualene-triterpenoid cyclase
           [Arabidopsis thaliana] GI:2738027
          Length = 763

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 464 HGGMICGAYPGSWKGCYCSLKGFYDWS 384
           HGG+    Y  SW   + S+ G YDWS
Sbjct: 211 HGGV---TYIPSWGKIWLSILGIYDWS 234


>At1g72300.1 68414.m08358 leucine-rich repeat transmembrane protein
           kinase, putative similar to GI:3641252 from [Malus x
           domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999))
          Length = 1095

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 325 RTFMIRLVMFAFLGGSLIRVVRALLVSS 242
           RT ++ LV+  F G SLI V+ ALLV S
Sbjct: 715 RTLVLGLVLGLFFGVSLILVLLALLVLS 742


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,558,169
Number of Sequences: 28952
Number of extensions: 119593
Number of successful extensions: 465
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)