Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e03
         (250 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   0.28 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   0.28 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    19   6.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    19   6.0  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    19   7.9  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    19   7.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 0.28
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 176 PSPVTPLSVISNSVSCAHPYPLRN 105
           PSP T  SV S SVS A PY L++
Sbjct: 702 PSPST--SVASPSVSVASPYMLQS 723


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 0.28
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 176 PSPVTPLSVISNSVSCAHPYPLRN 105
           PSP T  SV S SVS A PY L++
Sbjct: 594 PSPST--SVASPSVSVASPYMLQS 615


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 6.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 250  FFF*LYRVFIRLHLTHSQAYN 188
            FFF +   FI   L H Q +N
Sbjct: 980  FFFCMAAEFIIAALLHPQEFN 1000


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 19.4 bits (38), Expect = 6.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 250  FFF*LYRVFIRLHLTHSQAYN 188
            FFF +   FI   L H Q +N
Sbjct: 980  FFFCMAAEFIIAALLHPQEFN 1000


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 19.0 bits (37), Expect = 7.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 156 KRRHWRRTKLKL*ACECVK 212
           KRR W R    L +C  +K
Sbjct: 90  KRRTWTRLLKNLESCAKIK 108


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 19.0 bits (37), Expect = 7.9
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 179 CPSPVTPLSVISNSVSCAHPYP 114
           C S    LS  +++ +C + YP
Sbjct: 236 CSSSQPVLSTTNSTTNCYNNYP 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,376
Number of Sequences: 336
Number of extensions: 1007
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  3737755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)