Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e02
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    58   1e-09
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    28   1.2  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   3.8  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    26   5.0  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    25   6.6  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    25   8.8  
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    25   8.8  

>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
 Frame = +1

Query: 154 ADHGVLIHAGECIILFSDNVSVEFYGNDTPEFKG--IKEGRMYLTTHRMIYNSKKNTDAM 327
           ++  +L+   EC+    D V++       P  K     +G + LT  R++Y +K      
Sbjct: 12  SESDILLLENECMFDCFDGVAISILCKP-PSLKSWTCTKGLLCLTNQRLVYIAKDTDCDF 70

Query: 328 RSFSFPFIALQDVTVEQPMFSANCIKGKVRAQPNGNFIGEVKFKLTFKSGGAIEYGQA 501
           + F  P   L+D  + QP F AN   G V   PNG    E + KL F  GG   + +A
Sbjct: 71  KDFQSPVANLKDTKLNQPFFGANYYSGTVMPVPNGGIPCEAEVKLQFNEGGIFNFVEA 128


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 139 LNTAHADHGVLIHAGECII--LFSDNVSVEFYGNDT 240
           LN A +D G  I A +  +  L S N  +EFYG+DT
Sbjct: 114 LNIAESDTGSSIEAQDSWVYQLNSFNKKIEFYGDDT 149


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 97   LNVIYNQHNNCIMSLNTAHADHGVLIHAGECI-ILFSDNVS 216
            L+ + NQ    + S+N   ADH  L+ A EC  IL +D+ S
Sbjct: 1396 LHELVNQFLTGVASINHPIADHVFLLCAQECCRILLTDSKS 1436


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 241 PEFK-GIKEGRMYLTTHRMIYNSKKNTDAMRSFSFP 345
           PEF+ G+ EGR   +    +Y  +K  + ++SF+ P
Sbjct: 271 PEFQLGVWEGRNMYSFFAFMYVDEKEWEKLKSFNVP 306


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 589 LATVQSVGYKEVAKHQLPYDEKQDEQLLT 503
           LAT +  G KE+    LP  E  DE++ T
Sbjct: 412 LATAEKHGLKELENGTLPVTESVDEEVST 440


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = -3

Query: 446 SPIKLPLGW-ARTLPF 402
           +P+KLPLGW  + +PF
Sbjct: 370 NPLKLPLGWDGKPIPF 385


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 431 PLGWARTLPFIQLAENI 381
           PLGW  TLP + +A N+
Sbjct: 127 PLGWFETLPALCVATNV 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,783
Number of Sequences: 5004
Number of extensions: 46488
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)