Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19e02
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0710 + 19660895-19661004,19661571-19661682,19661808-196618... 42 4e-04
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426... 29 2.2
11_05_0104 + 19091507-19092091,19092669-19092752,19094597-19094746 29 3.0
03_06_0691 + 35576319-35576702,35576803-35576885,35576972-355770... 29 3.0
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 29 3.9
09_04_0755 - 19948942-19949088,19949249-19949396,19949512-199496... 29 3.9
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727... 28 5.2
05_03_0418 + 13700855-13700942,13701602-13701728,13701845-137019... 28 6.8
06_03_0384 + 20174441-20175788,20176215-20176858 27 9.0
>09_04_0710 +
19660895-19661004,19661571-19661682,19661808-19661879,
19661964-19662184,19662272-19662377
Length = 206
Score = 41.9 bits (94), Expect = 4e-04
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Frame = +1
Query: 133 MSLNTAHADHGVLI-HAGECIILFSDNVSVEFYGNDTPEFKG---IKEGRMYLTTHRMIY 300
M+ N +G+L+ GE +L D V EF+ + P G +G +YL+ RM++
Sbjct: 1 MAENPQLFGNGMLVPFYGEMFVLARDGV--EFHVDKIPSAPGGHAKTKGTIYLSNIRMVF 58
Query: 301 NSKKNTDAMRSFSFPFIALQDVTVEQPMFSANCIKGKVR----AQPNGNFIGEVKFKLTF 468
+ K +F P + + QP+F N I G V N FK+ F
Sbjct: 59 VASKPVGNFFAFDMPLLYVHGEKFNQPIFHCNNISGFVEPVVPENQNRALYSTHTFKILF 118
Query: 469 KSGG 480
K GG
Sbjct: 119 KEGG 122
>01_06_0319 - 28441082-28441102,28441630-28441701,28442568-28442627,
28442918-28443105,28444300-28444327,28444880-28444907,
28444942-28445163,28445238-28445409,28446224-28447468,
28447573-28447741,28447820-28448045,28449096-28449451,
28449530-28449724,28450655-28450864,28451729-28452004
Length = 1155
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -1
Query: 235 HSHRIQLTHCQKTR*CIPLRVSKLRDRRERYLKT*CNYCADYI 107
H + HC K C+ +++++ + R E+ L+T C C D++
Sbjct: 1042 HGLGVDFFHCMKCNCCLGMKLTEHKCR-EKGLETNCPICCDFL 1083
>11_05_0104 + 19091507-19092091,19092669-19092752,19094597-19094746
Length = 272
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 187 CIIL--FSDNVSVEFYGNDTPEFKGIKEGRMYLTTH 288
C +L D V V+ YG+D P F K GR+YL ++
Sbjct: 133 CFLLEVMKDEVEVQGYGSDDPVFS--KHGRLYLYSY 166
>03_06_0691 +
35576319-35576702,35576803-35576885,35576972-35577012,
35577974-35578018,35578217-35578371,35579116-35579265,
35579386-35579481,35579738-35579854,35579969-35580088,
35580170-35580262,35580351-35580467,35580815-35580931,
35581089-35581151,35581238-35581399
Length = 580
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = -2
Query: 285 SSEVHPSL-LDPLKLWC--IIPIEFN*HIVRKQDD--AFPCVYQNSVIGVSGI*RHNAII 121
+SEV SL LDP KLWC +I E + H+V + + + S+I + G + +++I
Sbjct: 445 TSEVSISLTLDPSKLWCRELIQQELD-HVVEELEKIAVVHLLQHRSIISLIGNVQRSSLI 503
Query: 120 VLIIYNI*PLRFKKLNLNLI 61
+ +N+ LR +N+ +I
Sbjct: 504 LEKAFNV--LRRNGVNVQMI 521
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 482 APPDLKVSLNLTSPIKLPLGWARTL 408
APP V+L L+ +K P GW +TL
Sbjct: 913 APPRYLVALELSGMLKKPPGWIKTL 937
>09_04_0755 -
19948942-19949088,19949249-19949396,19949512-19949648,
19949933-19949995,19950175-19950288,19951410-19951514,
19951794-19951853,19952604-19952639,19953176-19953467,
19954168-19954253,19954641-19954901
Length = 482
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 406 GKVRAQPNGNFIGEVKFKLTFKSGGAIEYGQ 498
G+ RA P G GE+ F SGG I +G+
Sbjct: 69 GRRRASPAGALSGEMPASAAFVSGGIISWGK 99
>12_02_0811 -
23370455-23370472,23372279-23372538,23372645-23372713,
23372979-23373105,23373187-23373422,23373509-23373678,
23373855-23373935,23374013-23374084,23374273-23374344,
23374450-23374588,23375141-23375643,23376817-23377010,
23377952-23378488
Length = 825
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -3
Query: 497 CPYSIAPPDLKVSLNLTS-----PIKLPLGWARTLPFIQLAEN 384
C YS + P L +LNL+S P+ L G ++L ++ L+ N
Sbjct: 445 CGYSSSDPALVTALNLSSSVLIGPVNLSFGDLKSLQYLDLSNN 487
>05_03_0418 +
13700855-13700942,13701602-13701728,13701845-13701916,
13702079-13702153,13702290-13702361,13702477-13702638,
13702726-13702800,13702880-13702951,13703040-13703108,
13703196-13703264,13703355-13703429,13703522-13703593,
13703668-13703737,13703920-13704361,13704442-13704573,
13704664-13704803,13704910-13705129,13705301-13705536,
13705732-13706256
Length = 930
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 407 VKFVPNLMATLLVRSNSSLPSNQEVLLSMD 496
VKF+P+L A L + NS P+N ++ S D
Sbjct: 429 VKFLPSLQANLSSKLNSCTPNNLGLVYSND 458
>06_03_0384 + 20174441-20175788,20176215-20176858
Length = 663
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 94 WLNVIYNQHNNCIMSLNTAHADHGVLIHAGECIILFSDN 210
+LNV YN + + H +H+G ++FS+N
Sbjct: 204 FLNVSYNNFSGVVDGGAVKKFGHSAFVHSGNTSLVFSEN 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,274,279
Number of Sequences: 37544
Number of extensions: 272538
Number of successful extensions: 556
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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