Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e02
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30260| Best HMM Match : Sec2p (HMM E-Value=1.3)                     29   3.0  
SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7)                    29   4.0  
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.2  

>SB_30260| Best HMM Match : Sec2p (HMM E-Value=1.3)
          Length = 303

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 583 TVQSVGYKEVAKHQLPYDEKQDEQLLTWLVHTQ 485
           T   + Y+ ++K       K+DEQLL+ LVH+Q
Sbjct: 130 TEHQLDYQAISKGHFSEVSKEDEQLLSSLVHSQ 162


>SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7)
          Length = 117

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 151 HADHGVLIHAGECIILFSDNVSVEFYGNDT 240
           H D  V++H G+C+I   D  +V   G  T
Sbjct: 27  HDDQCVIVHGGQCMIAHGDRCTVSHSGRCT 56


>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1252

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 442 GEVKFKLTFKSGGAIEYGQAMLKAAHL 522
           GEVK +   K+G  I+YG+ +L+ +HL
Sbjct: 378 GEVKDQGKVKAGDVIKYGKPVLRQSHL 404


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +1

Query: 94   WLNVIYNQHNNCIMSLNTAHADHGVLIHAG 183
            W N +Y  H NC    N  H      I+ G
Sbjct: 2751 WANTVYRVHGNCRQKTNDGHCCSFPFIYRG 2780


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,966,444
Number of Sequences: 59808
Number of extensions: 331232
Number of successful extensions: 762
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)