Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19e02
(619 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 2.4
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 23 3.2
M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-... 22 5.5
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 21 9.6
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 21 9.6
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 21 9.6
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 9.6
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.0 bits (47), Expect = 2.4
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +1
Query: 241 PEFKGIKEGRMYLTTHRMIY------NSKKNTDAMRSFSFPFIALQDVTVEQPMFSANCI 402
PE + +G +YLT ++I+ ++ +N D +++ + +V V P F A +
Sbjct: 357 PEIRVFNDGSLYLTKVQLIHAGNYTCHAVRNQDVVQTHVLTIHTIPEVKV-TPRFQAKRL 415
Query: 403 K 405
K
Sbjct: 416 K 416
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.6 bits (46), Expect = 3.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 203 LTMCQLNSMGMIHQSLRGSRRDGCTSLLIE*FTIQR 310
+ + Q + MG +++L RR+G S+L F +QR
Sbjct: 207 MALSQFDLMGSPYRNLTFVRREGEFSVLQVSFNLQR 242
>M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H55. ).
Length = 86
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -2
Query: 426 RLGTNFTFYTVGREHRLFHSYILQCNKRKTE*SHGICI 313
R T++T Y + FH +R+ E +H +C+
Sbjct: 10 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 47
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +1
Query: 298 YNSKKNTDAMRSFSFPFIALQDVTVEQPMFSAN 396
YN+ NT+ + + I ++ + V P++ N
Sbjct: 97 YNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 129
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +1
Query: 298 YNSKKNTDAMRSFSFPFIALQDVTVEQPMFSAN 396
YN+ NT+ + + I ++ + V P++ N
Sbjct: 97 YNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 129
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +1
Query: 298 YNSKKNTDAMRSFSFPFIALQDVTVEQPMFSAN 396
YN+ NT+ + + I ++ + V P++ N
Sbjct: 97 YNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 129
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +1
Query: 298 YNSKKNTDAMRSFSFPFIALQDVTVEQPMFSAN 396
YN+ NT+ + + I ++ + V P++ N
Sbjct: 97 YNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 129
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +1
Query: 298 YNSKKNTDAMRSFSFPFIALQDVTVEQPMFSAN 396
YN+ NT+ + + I ++ + V P++ N
Sbjct: 97 YNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 129
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +1
Query: 298 YNSKKNTDAMRSFSFPFIALQDVTVEQPMFSAN 396
YN+ NT+ + + I ++ + V P++ N
Sbjct: 97 YNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 129
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +1
Query: 298 YNSKKNTDAMRSFSFPFIALQDVTVEQPMFSAN 396
YN+ NT+ + + I ++ + V P++ N
Sbjct: 101 YNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 133
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +1
Query: 298 YNSKKNTDAMRSFSFPFIALQDVTVEQPMFSAN 396
YN+ NT+ + + I ++ + V P++ N
Sbjct: 97 YNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGN 129
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.0 bits (42), Expect = 9.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 226 RIQLTHCQKTR*CIPLRVSKLRDRR 152
R LT C TR +PL +S L+D R
Sbjct: 627 RTTLT-CSVTRGDLPLSISWLKDGR 650
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,036
Number of Sequences: 438
Number of extensions: 3141
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -