Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e02
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11680.1 68418.m01365 expressed protein predicted proteins, A...    43   1e-04
At5g04920.1 68418.m00519 vacuolar protein sorting 36 family prot...    39   0.002
At3g44670.1 68416.m04804 disease resistance protein RPP1-Ws[A,C]...    28   4.3  
At1g03760.1 68414.m00356 prefoldin subunit family protein contai...    28   5.7  
At1g66980.1 68414.m07616 protein kinase family protein / glycero...    27   7.5  

>At5g11680.1 68418.m01365 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 207

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
 Frame = +1

Query: 133 MSLNTAHADHGVLI-HAGECIILFSDNVSVEFYGNDTPEFKG--IK-EGRMYLTTHRMIY 300
           M+LN     +G+ +    E  +L  D V  EF  +  P   G  +K +G +YL+  RM++
Sbjct: 1   MALNPQLLPNGMPVPFVNEMFVLVRDGV--EFEVDKIPGGHGGHVKAKGVIYLSNIRMVF 58

Query: 301 NSKKNTDAMRSFSFPFIALQDVTVEQPMFSANCIKGKVRAQPNGN----FIGEVKFKLTF 468
            S K  D   +F  P + +      QP+F  N I G+V      N          FK+ F
Sbjct: 59  VSSKPVDNFVAFDMPLLYIHAEKFNQPIFHCNNIAGQVEPVVPENEHRALYSTHSFKILF 118

Query: 469 KSGG 480
           K GG
Sbjct: 119 KEGG 122


>At5g04920.1 68418.m00519 vacuolar protein sorting 36 family protein
           / VPS36 family protein contains Pfam PF04132: Vacuolar
           protein sorting 36
          Length = 440

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
 Frame = +1

Query: 184 ECIILFSDNVSVEFYGNDTPEFKGIKEGRMYLTTHRMIYNSKKNTDAMRSFSFPFIALQD 363
           EC +L S ++  E   +D P F  ++ G + LTTHR+I+   ++ +++ S S P  A+  
Sbjct: 33  ECFLLSSIDIDSE---DDPPRFTALRSGNLILTTHRLIWIPSQSNESVPS-SIPLSAVTH 88

Query: 364 VTVEQPMFSANCIKGKVRAQPN-GNFIGEVKFK 459
           +   +    +     ++R Q + G+ +  + F+
Sbjct: 89  IYSHKKSIKSMFHSPRIRFQADPGSIVVTIVFR 121


>At3g44670.1 68416.m04804 disease resistance protein
           RPP1-Ws[A,C]-like (TIR-NBS-LRR class), putative domain
           signature TIR-NBS-LRR exists, suggestive of a disease
           resistance protein. Closest Col-0 homolog to both RPP1
           Ws-A and RPP1 Ws-C
          Length = 872

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 318 CILL*IVNHSMSSEVHPSLLDPLKLWCIIPIEFN 217
           CI+L  VN  MSS++   + DP+++  +I  E N
Sbjct: 699 CIMLVKVNEEMSSDLKSMIFDPMRVDIVIRDEQN 732


>At1g03760.1 68414.m00356 prefoldin subunit family protein contains
           similarity to Swiss-Prot:O94763 RNA polymerase II
           subunit 5-mediating protein (RPB5-mediating protein)
           [Homo sapiens]; contains Pfam profile PF02996: Prefoldin
           subunit
          Length = 391

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 118 HNNCIMSLNTAHADHGVLIHAGECIILFSDNVSVEFYGNDTPEF 249
           H+N ++         G LIH  EC++L  +N   +     T +F
Sbjct: 62  HHNVMVPFGKMAFFPGRLIHTNECLVLLGENYYTDRSSKQTVDF 105


>At1g66980.1 68414.m07616 protein kinase family protein /
           glycerophosphoryl diester phosphodiesterase family
           protein similar to leaf rust resistance kinase Lr10
           GI:1680685 from [Triticum aestivum]; contains Pfam
           profiles PF03009: Glycerophosphoryl diester
           phosphodiesterase family, PF00069: Protein kinase domain
          Length = 1109

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 363 ILQCNKRKTE*SHGICIL-L*IVNHSMSSEVHPS 265
           +L C+ + T+  HGIC   L + N S S EV+P+
Sbjct: 83  VLWCDVQLTKDGHGICFPDLNLANASNSEEVYPN 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,775,474
Number of Sequences: 28952
Number of extensions: 230545
Number of successful extensions: 490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)