Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19e01
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 154 1e-38
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 154 1e-38
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 154 1e-38
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 154 1e-38
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 154 1e-38
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 154 1e-38
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 154 1e-38
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 154 1e-38
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 151 9e-38
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 151 9e-38
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 151 9e-38
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 31 0.15
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 27 1.8
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 27 1.8
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 9.5
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 9.5
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 154 bits (373), Expect = 1e-38
Identities = 75/210 (35%), Positives = 122/210 (58%)
Frame = +3
Query: 24 YRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEVTKS 203
Y L P K + M +EI + L II E ++ P + +PK G +R VDY+ LN+ K
Sbjct: 418 YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 477
Query: 204 DTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFG 383
+ YPLP I+ LL + + T +DL+S+Y + VR+ D K AF CP G + + MP+G
Sbjct: 478 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 537
Query: 384 LKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLH 563
+ APA FQ I+ + A K+ V+ Y+DD+LI S+ +H++ ++ V ++L L
Sbjct: 538 ISTAPAHFQYFINTILGEA--KESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI 595
Query: 564 VNREKCTFAKERVRYLGHVITPDGVSPDPE 653
+N+ KC F + +V+++G+ I+ G +P E
Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQE 625
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 154 bits (373), Expect = 1e-38
Identities = 75/210 (35%), Positives = 122/210 (58%)
Frame = +3
Query: 24 YRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEVTKS 203
Y L P K + M +EI + L II E ++ P + +PK G +R VDY+ LN+ K
Sbjct: 418 YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 477
Query: 204 DTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFG 383
+ YPLP I+ LL + + T +DL+S+Y + VR+ D K AF CP G + + MP+G
Sbjct: 478 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 537
Query: 384 LKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLH 563
+ APA FQ I+ + A K+ V+ Y+DD+LI S+ +H++ ++ V ++L L
Sbjct: 538 ISTAPAHFQYFINTILGEA--KESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI 595
Query: 564 VNREKCTFAKERVRYLGHVITPDGVSPDPE 653
+N+ KC F + +V+++G+ I+ G +P E
Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQE 625
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 154 bits (373), Expect = 1e-38
Identities = 75/210 (35%), Positives = 122/210 (58%)
Frame = +3
Query: 24 YRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEVTKS 203
Y L P K + M +EI + L II E ++ P + +PK G +R VDY+ LN+ K
Sbjct: 418 YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 477
Query: 204 DTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFG 383
+ YPLP I+ LL + + T +DL+S+Y + VR+ D K AF CP G + + MP+G
Sbjct: 478 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 537
Query: 384 LKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLH 563
+ APA FQ I+ + A K+ V+ Y+DD+LI S+ +H++ ++ V ++L L
Sbjct: 538 ISTAPAHFQYFINTILGEA--KESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI 595
Query: 564 VNREKCTFAKERVRYLGHVITPDGVSPDPE 653
+N+ KC F + +V+++G+ I+ G +P E
Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQE 625
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 154 bits (373), Expect = 1e-38
Identities = 75/210 (35%), Positives = 122/210 (58%)
Frame = +3
Query: 24 YRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEVTKS 203
Y L P K + M +EI + L II E ++ P + +PK G +R VDY+ LN+ K
Sbjct: 418 YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 477
Query: 204 DTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFG 383
+ YPLP I+ LL + + T +DL+S+Y + VR+ D K AF CP G + + MP+G
Sbjct: 478 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 537
Query: 384 LKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLH 563
+ APA FQ I+ + A K+ V+ Y+DD+LI S+ +H++ ++ V ++L L
Sbjct: 538 ISTAPAHFQYFINTILGEA--KESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI 595
Query: 564 VNREKCTFAKERVRYLGHVITPDGVSPDPE 653
+N+ KC F + +V+++G+ I+ G +P E
Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQE 625
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 154 bits (373), Expect = 1e-38
Identities = 75/210 (35%), Positives = 122/210 (58%)
Frame = +3
Query: 24 YRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEVTKS 203
Y L P K + M +EI + L II E ++ P + +PK G +R VDY+ LN+ K
Sbjct: 418 YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 477
Query: 204 DTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFG 383
+ YPLP I+ LL + + T +DL+S+Y + VR+ D K AF CP G + + MP+G
Sbjct: 478 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 537
Query: 384 LKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLH 563
+ APA FQ I+ + A K+ V+ Y+DD+LI S+ +H++ ++ V ++L L
Sbjct: 538 ISTAPAHFQYFINTILGEA--KESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI 595
Query: 564 VNREKCTFAKERVRYLGHVITPDGVSPDPE 653
+N+ KC F + +V+++G+ I+ G +P E
Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQE 625
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 154 bits (373), Expect = 1e-38
Identities = 75/210 (35%), Positives = 122/210 (58%)
Frame = +3
Query: 24 YRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEVTKS 203
Y L P K + M +EI + L II E ++ P + +PK G +R VDY+ LN+ K
Sbjct: 418 YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 477
Query: 204 DTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFG 383
+ YPLP I+ LL + + T +DL+S+Y + VR+ D K AF CP G + + MP+G
Sbjct: 478 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 537
Query: 384 LKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLH 563
+ APA FQ I+ + A K+ V+ Y+DD+LI S+ +H++ ++ V ++L L
Sbjct: 538 ISTAPAHFQYFINTILGEA--KESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI 595
Query: 564 VNREKCTFAKERVRYLGHVITPDGVSPDPE 653
+N+ KC F + +V+++G+ I+ G +P E
Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQE 625
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 154 bits (373), Expect = 1e-38
Identities = 75/210 (35%), Positives = 122/210 (58%)
Frame = +3
Query: 24 YRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEVTKS 203
Y L P K + M +EI + L II E ++ P + +PK G +R VDY+ LN+ K
Sbjct: 418 YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 477
Query: 204 DTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFG 383
+ YPLP I+ LL + + T +DL+S+Y + VR+ D K AF CP G + + MP+G
Sbjct: 478 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 537
Query: 384 LKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLH 563
+ APA FQ I+ + A K+ V+ Y+DD+LI S+ +H++ ++ V ++L L
Sbjct: 538 ISTAPAHFQYFINTILGEA--KESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI 595
Query: 564 VNREKCTFAKERVRYLGHVITPDGVSPDPE 653
+N+ KC F + +V+++G+ I+ G +P E
Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQE 625
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 154 bits (373), Expect = 1e-38
Identities = 75/210 (35%), Positives = 122/210 (58%)
Frame = +3
Query: 24 YRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEVTKS 203
Y L P K + M +EI + L II E ++ P + +PK G +R VDY+ LN+ K
Sbjct: 418 YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 477
Query: 204 DTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFG 383
+ YPLP I+ LL + + T +DL+S+Y + VR+ D K AF CP G + + MP+G
Sbjct: 478 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 537
Query: 384 LKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLH 563
+ APA FQ I+ + A K+ V+ Y+DD+LI S+ +H++ ++ V ++L L
Sbjct: 538 ISTAPAHFQYFINTILGEA--KESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI 595
Query: 564 VNREKCTFAKERVRYLGHVITPDGVSPDPE 653
+N+ KC F + +V+++G+ I+ G +P E
Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQE 625
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 151 bits (366), Expect = 9e-38
Identities = 73/210 (34%), Positives = 122/210 (58%)
Frame = +3
Query: 24 YRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEVTKS 203
Y L P K + M +EI + L II E ++ P + +PK G +R VDY+ LN+ K
Sbjct: 418 YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 477
Query: 204 DTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFG 383
+ YPLP I+ LL + + T +DL+S+Y + VR+ D K AF CP G + + MP+G
Sbjct: 478 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 537
Query: 384 LKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLH 563
+ APA FQ I+ + +K+ V+ Y+D++LI S+ +H++ ++ V ++L L
Sbjct: 538 ISIAPAHFQYFINTI--LGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLI 595
Query: 564 VNREKCTFAKERVRYLGHVITPDGVSPDPE 653
+N+ KC F + +V+++G+ I+ G +P E
Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQE 625
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 151 bits (366), Expect = 9e-38
Identities = 73/210 (34%), Positives = 122/210 (58%)
Frame = +3
Query: 24 YRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEVTKS 203
Y L P K + M +EI + L II E ++ P + +PK G +R VDY+ LN+ K
Sbjct: 418 YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 477
Query: 204 DTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFG 383
+ YPLP I+ LL + + T +DL+S+Y + VR+ D K AF CP G + + MP+G
Sbjct: 478 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 537
Query: 384 LKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLH 563
+ APA FQ I+ + +K+ V+ Y+D++LI S+ +H++ ++ V ++L L
Sbjct: 538 ISIAPAHFQYFINTI--LGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLI 595
Query: 564 VNREKCTFAKERVRYLGHVITPDGVSPDPE 653
+N+ KC F + +V+++G+ I+ G +P E
Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQE 625
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 151 bits (366), Expect = 9e-38
Identities = 73/210 (34%), Positives = 122/210 (58%)
Frame = +3
Query: 24 YRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEVTKS 203
Y L P K + M +EI + L II E ++ P + +PK G +R VDY+ LN+ K
Sbjct: 418 YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKP 477
Query: 204 DTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFG 383
+ YPLP I+ LL + + T +DL+S+Y + VR+ D K AF CP G + + MP+G
Sbjct: 478 NIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYG 537
Query: 384 LKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLH 563
+ APA FQ I+ + +K+ V+ Y+D++LI S+ +H++ ++ V ++L L
Sbjct: 538 ISIAPAHFQYFINTI--LGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLI 595
Query: 564 VNREKCTFAKERVRYLGHVITPDGVSPDPE 653
+N+ KC F + +V+++G+ I+ G +P E
Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQE 625
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 132 MIPKSNGNVRFCVDYRRLNEVTKSDTYPLPRIDDLLQSTKKNCYMTT 272
M KSNG V +C + ++LN T T+ +P L + +C + T
Sbjct: 329 MTSKSNGGVAYCYNAQKLNNATGPVTFNMPFASVLPLAVSVSCDLGT 375
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 431 LLCCFEGCYSTCLSRRFVNYFRRIPATPTRPGSCF*TS-V*I*TSRKQREV-HFCQRKGP 604
++ C GCYS+ + F IP G F S + + R+QRE+ F QR
Sbjct: 139 VVICMNGCYSSFYQTWYTLLFFYIPPCLLSFGGLFFVSRIVVLYWRRQRELQQFFQRDSQ 198
Query: 605 LSGPRHHSRRCVS 643
L+ R C++
Sbjct: 199 LTSKRFLRLLCLA 211
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 492 SEGFQQHLQDLEAVFRRLSEFKLHVNREK-CTFAKERVRYLGHVITPDG 635
S+ +Q+ L+DL ++ K+ + REK C F +R+ I PDG
Sbjct: 835 SKLYQKRLEDLNEELTKVRSEKVVITREKTCLFCHKRLGKSVISIFPDG 883
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 369 RMPFGLKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLL 485
R F L P T ID+++ +LK +T ++ LD+ +
Sbjct: 279 RKGFALLQIPWTSVTTIDKIKKVKSLKIITEVSSLDEFV 317
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 270 WSCNNSSSYSGEDHQCVGVGKYPIWLLHLSACNPRR 163
W +Y+ D V G +W +LS C P+R
Sbjct: 310 WVMQIVIAYTVVDQTAVVTGSDSMWATYLSQCLPKR 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,849
Number of Sequences: 5004
Number of extensions: 53672
Number of successful extensions: 164
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -