Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19e01
(653 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein. 65 2e-10
AK127270-1|BAC86909.1| 248|Homo sapiens protein ( Homo sapiens ... 54 6e-07
AJ233629-1|CAA13575.1| 109|Homo sapiens reverse transcriptase p... 53 8e-07
M74509-1|AAA73090.1| 395|Homo sapiens protein ( Human endogenou... 47 5e-05
AJ233632-1|CAA13576.1| 109|Homo sapiens reverse transcriptase p... 43 8e-04
CR533567-1|CAG38598.1| 691|Homo sapiens KIAA1536 protein. 30 8.3
BC003177-1|AAH03177.1| 691|Homo sapiens calcium binding and coi... 30 8.3
AY563137-1|AAT68474.1| 691|Homo sapiens calphoglin protein. 30 8.3
AY358397-1|AAQ88763.1| 691|Homo sapiens EESP2436 protein. 30 8.3
AY211909-1|AAO65163.1| 309|Homo sapiens sarcoma antigen NY-SAR-... 30 8.3
AB040969-1|BAA96060.1| 645|Homo sapiens KIAA1536 protein protein. 30 8.3
>AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein.
Length = 863
Score = 65.3 bits (152), Expect = 2e-10
Identities = 53/222 (23%), Positives = 99/222 (44%), Gaps = 9/222 (4%)
Frame = +3
Query: 6 PIAVPPYRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRL 185
P +P + L K + + + + L ++ S W +P +I K +G + D R +
Sbjct: 25 PKWIPQWPLTQEKLAAVNDIVLQQLEAGHLQPSTSPWNTPVFVIKKKSGKYQLLHDLRAV 84
Query: 186 NEVTKSDTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPL----- 350
N+ + P + + K+ + +DL+ ++ + + E D + AF P
Sbjct: 85 NQQMQPMGALQPGLP-VPTMIPKHWPLIVLDLKDCFFSIPLHEQDIQRFAFTVPSINHQG 143
Query: 351 --GTYRFKRMPFGLKNAPATFQRLIDRLRSCAALK--DVTVLAYLDDLLIISEGFQQHLQ 518
Y +K +P G+ N+PA Q +D+ + V +L Y+DDLLI +E ++
Sbjct: 144 PDKRYEWKVLPQGMTNSPAICQLYVDQAVEPVRQQCPKVQILHYMDDLLITAESESHLME 203
Query: 519 DLEAVFRRLSEFKLHVNREKCTFAKERVRYLGHVITPDGVSP 644
+ + L + L V E+ E V+YLG +T + V+P
Sbjct: 204 AYKLLLLYLEKVGLQVAPERIQ-KGEVVQYLGLKVTSEKVTP 244
>AK127270-1|BAC86909.1| 248|Homo sapiens protein ( Homo sapiens
cDNA FLJ45337 fis, clone BRHIP3007960. ).
Length = 248
Score = 53.6 bits (123), Expect = 6e-07
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Frame = +3
Query: 261 YMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFGLKNAPATFQRLIDRLRSC- 437
+ IDL ++++ + V +A + + AF Y F +P N+PA LI R C
Sbjct: 4 WYAAIDLANAFFSIPVHKAHQKQFAFSWQGQQYTFTVLPQRYSNSPALCHNLIRRDLDCF 63
Query: 438 AALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLHVNREKCTFAKERVRYLG 614
L+ +T++ Y+DD+++I Q+ L+ + R L +N K V++LG
Sbjct: 64 LLLQSITLVHYIDDIMLIGSSEQEVASTLDLLVRHLYARGWEINPTKIKETSTSVKFLG 122
>AJ233629-1|CAA13575.1| 109|Homo sapiens reverse transcriptase
protein.
Length = 109
Score = 53.2 bits (122), Expect = 8e-07
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Frame = +3
Query: 159 RFCVDYRRLNEVTKSDTYPLPRIDDLLQ--STKKNCYMTTIDLRSSYWQVMVREADRDKT 332
R V Y RLN+V +P + LL+ +T + DL ++++ ++V +A + +
Sbjct: 1 RMSVGYCRLNQVVTPIVAAVPDVVSLLEQINTSPGTWYAATDLANAFFSILVHKAHQKQF 60
Query: 333 AFVCPLGTYRFKRMPFGLKNAPATFQRLIDRLRSCAAL-KDVTVLAYLD 476
AF Y F +P G N+PA LI R C L +D+T++ Y+D
Sbjct: 61 AFTWQGQQYAFTVLPQGYINSPALCHNLIWRDPDCFLLPQDITLVPYID 109
>M74509-1|AAA73090.1| 395|Homo sapiens protein ( Human endogenous
retrovirus type C oncovirus sequence. ).
Length = 395
Score = 47.2 bits (107), Expect = 5e-05
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 10/195 (5%)
Frame = +3
Query: 90 IIEECESAWCSPALMIPK-SNGNVRFCVDYRRLNEVTKSDTYPLPRIDDLL-QSTKKNCY 263
II C+S W +P L +PK + R D R +N+ T + +P + LL ++ +
Sbjct: 192 IIVPCQSPWNTPLLPVPKPGTKDYRPVQDLRLVNQATVTLHPTVPNLYTLLGLLPAEDSW 251
Query: 264 MTTIDLRSSYWQVMVREADRDKTAFVCP------LGTYRFKRMPFGLKNAPATFQRLIDR 425
T +DL+ +++ + + + AF Y + ++P KN+P F + R
Sbjct: 252 FTCLDLKDAFFSIRLAPERQKLFAFQWEDPESGVTTQYTWTQLPQRFKNSPTIFGEALAR 311
Query: 426 LRSCAALKDV--TVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLHVNREKCTFAKER 599
+D+ +L Y+DDLL+ + +A+ R L + V+++K +
Sbjct: 312 DLQKFPTRDLGCVLLQYVDDLLLGHPTAVGCAKGTDALLRHLEDCGYKVSKKKSSDLPTA 371
Query: 600 VRYLGHVITPDGVSP 644
LG G P
Sbjct: 372 GMLLGIYYPTGGAQP 386
>AJ233632-1|CAA13576.1| 109|Homo sapiens reverse transcriptase
protein.
Length = 109
Score = 43.2 bits (97), Expect = 8e-04
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Frame = +3
Query: 159 RFCVDYRRLNEVTKSDTYPLPRIDDLLQ--STKKNCYMTTIDLRSSYWQVMVREADRDKT 332
R VDYR+LN+ + + + LL+ +T + + DL +++ + V +A + +
Sbjct: 1 RMIVDYRKLNKGSTPTAAAVSDVVSLLEQINTSPDTWYVATDLANAFCSIPVHKAHQKQF 60
Query: 333 AFVCPLGTYRFKRMPFGLKNAPATFQRLIDR-LRSCAALKDVTVLAYLD 476
AF Y F + G N+PA L+ R L + +D+T+ Y+D
Sbjct: 61 AFGWQGQEYTFTVLSQGYINSPALCHNLVQRDLDHFSLPQDITLFHYID 109
>CR533567-1|CAG38598.1| 691|Homo sapiens KIAA1536 protein.
Length = 691
Score = 29.9 bits (64), Expect = 8.3
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 489 ISEGFQQHLQDLEAVFRRLSEFKLHVNREKCTFAKERVRYLGHV 620
I+E + L+ E V RL+E LH+ EKC ++KER L V
Sbjct: 377 IAELHRSRLEVAE-VNGRLAELGLHLKEEKCQWSKERAGLLQSV 419
>BC003177-1|AAH03177.1| 691|Homo sapiens calcium binding and
coiled-coil domain 1 protein.
Length = 691
Score = 29.9 bits (64), Expect = 8.3
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 489 ISEGFQQHLQDLEAVFRRLSEFKLHVNREKCTFAKERVRYLGHV 620
I+E + L+ E V RL+E LH+ EKC ++KER L V
Sbjct: 377 IAELHRSRLEVAE-VNGRLAELGLHLKEEKCQWSKERAGLLQSV 419
>AY563137-1|AAT68474.1| 691|Homo sapiens calphoglin protein.
Length = 691
Score = 29.9 bits (64), Expect = 8.3
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 489 ISEGFQQHLQDLEAVFRRLSEFKLHVNREKCTFAKERVRYLGHV 620
I+E + L+ E V RL+E LH+ EKC ++KER L V
Sbjct: 377 IAELHRSRLEVAE-VNGRLAELGLHLKEEKCQWSKERAGLLQSV 419
>AY358397-1|AAQ88763.1| 691|Homo sapiens EESP2436 protein.
Length = 691
Score = 29.9 bits (64), Expect = 8.3
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 489 ISEGFQQHLQDLEAVFRRLSEFKLHVNREKCTFAKERVRYLGHV 620
I+E + L+ E V RL+E LH+ EKC ++KER L V
Sbjct: 377 IAELHRSRLEVAE-VNGRLAELGLHLKEEKCQWSKERAGLLQSV 419
>AY211909-1|AAO65163.1| 309|Homo sapiens sarcoma antigen NY-SAR-3
protein.
Length = 309
Score = 29.9 bits (64), Expect = 8.3
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 489 ISEGFQQHLQDLEAVFRRLSEFKLHVNREKCTFAKERVRYLGHV 620
I+E + L+ E V RL+E LH+ EKC ++KER L V
Sbjct: 231 IAELHRSRLEVAE-VNGRLAELGLHLKEEKCQWSKERAGLLQSV 273
>AB040969-1|BAA96060.1| 645|Homo sapiens KIAA1536 protein protein.
Length = 645
Score = 29.9 bits (64), Expect = 8.3
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 489 ISEGFQQHLQDLEAVFRRLSEFKLHVNREKCTFAKERVRYLGHV 620
I+E + L+ E V RL+E LH+ EKC ++KER L V
Sbjct: 389 IAELHRSRLEVAE-VNGRLAELGLHLKEEKCQWSKERAGLLQSV 431
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,809,188
Number of Sequences: 237096
Number of extensions: 1989771
Number of successful extensions: 3810
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3810
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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