Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e01
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...   157   6e-39
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...   157   6e-39
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...   157   6e-39
Z69385-8|CAA93423.1|  529|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF016442-1|AAB65918.1|  340|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z47357-3|CAA87422.1|  360|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81560-1|CAB04545.1|  381|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score =  157 bits (381), Expect = 6e-39
 Identities = 75/211 (35%), Positives = 121/211 (57%)
 Frame = +3

Query: 6    PIAVPPYRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRL 185
            PI   P  +  + K  ++  I+KML   +I E +S W SP +++ K +G++R C+DYR++
Sbjct: 1028 PIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKV 1087

Query: 186  NEVTKSDTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRF 365
            N+V K++ +PLP I+  LQS       T  D+ + +WQ+ + E  ++ TAF      + +
Sbjct: 1088 NKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEW 1147

Query: 366  KRMPFGLKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRL 545
              +PFGL  +PA FQ  ++ +     L  V    Y+DDLLI S+  +QHLQD++    R+
Sbjct: 1148 NVLPFGLVISPALFQGTMEEI--IGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRI 1205

Query: 546  SEFKLHVNREKCTFAKERVRYLGHVITPDGV 638
             +  + +   KC  AK+ V YLGH +T DGV
Sbjct: 1206 RKSGMKLRASKCHIAKKEVEYLGHKVTLDGV 1236


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score =  157 bits (381), Expect = 6e-39
 Identities = 75/211 (35%), Positives = 121/211 (57%)
 Frame = +3

Query: 6    PIAVPPYRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRL 185
            PI   P  +  + K  ++  I+KML   +I E +S W SP +++ K +G++R C+DYR++
Sbjct: 931  PIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKV 990

Query: 186  NEVTKSDTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRF 365
            N+V K++ +PLP I+  LQS       T  D+ + +WQ+ + E  ++ TAF      + +
Sbjct: 991  NKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEW 1050

Query: 366  KRMPFGLKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRL 545
              +PFGL  +PA FQ  ++ +     L  V    Y+DDLLI S+  +QHLQD++    R+
Sbjct: 1051 NVLPFGLVISPALFQGTMEEI--IGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRI 1108

Query: 546  SEFKLHVNREKCTFAKERVRYLGHVITPDGV 638
             +  + +   KC  AK+ V YLGH +T DGV
Sbjct: 1109 RKSGMKLRASKCHIAKKEVEYLGHKVTLDGV 1139


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score =  157 bits (381), Expect = 6e-39
 Identities = 75/211 (35%), Positives = 121/211 (57%)
 Frame = +3

Query: 6    PIAVPPYRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRL 185
            PI   P  +  + K  ++  I+KML   +I E +S W SP +++ K +G++R C+DYR++
Sbjct: 942  PIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKV 1001

Query: 186  NEVTKSDTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRF 365
            N+V K++ +PLP I+  LQS       T  D+ + +WQ+ + E  ++ TAF      + +
Sbjct: 1002 NKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEW 1061

Query: 366  KRMPFGLKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRL 545
              +PFGL  +PA FQ  ++ +     L  V    Y+DDLLI S+  +QHLQD++    R+
Sbjct: 1062 NVLPFGLVISPALFQGTMEEI--IGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRI 1119

Query: 546  SEFKLHVNREKCTFAKERVRYLGHVITPDGV 638
             +  + +   KC  AK+ V YLGH +T DGV
Sbjct: 1120 RKSGMKLRASKCHIAKKEVEYLGHKVTLDGV 1150


>Z69385-8|CAA93423.1|  529|Caenorhabditis elegans Hypothetical
           protein ZK593.9 protein.
          Length = 529

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
 Frame = +3

Query: 24  YRLNPSKKETMKNEIEK----MLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNE 191
           Y+L+P+K++TMK  ++K    +  + +++E E     P L   +SNGN+   VD     +
Sbjct: 352 YQLDPAKRDTMKVIVKKLETWLEVELVLDENEKPEIDPEL--NRSNGNMPIPVD--SSTK 407

Query: 192 VTKSDTYPLP 221
             ++DT  +P
Sbjct: 408 KMRNDTVCIP 417


>AF016442-1|AAB65918.1|  340|Caenorhabditis elegans Hypothetical
           protein K12B6.3 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 33  NPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRF-CVDYRRLNEVTKSDT 209
           N +KKE          ADD+I   +  W  P  +IP S+G + +  + + +  E T  D 
Sbjct: 272 NSNKKEASYIFSTWSKADDLIGNSDIVWGRPTSLIPLSDGKIIYEKLTHMQSKENTAIDQ 331

Query: 210 YPL 218
           Y +
Sbjct: 332 YKM 334


>Z47357-3|CAA87422.1|  360|Caenorhabditis elegans Hypothetical
           protein ZK1128.3 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 496 KDSSNTYKTWKLFLDVCL 549
           KDS++ ++TW  FLD CL
Sbjct: 193 KDSNSMFRTWNHFLDGCL 210


>Z81560-1|CAB04545.1|  381|Caenorhabditis elegans Hypothetical
           protein K02E2.1 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 129 LMIPKSNGNVRFCVDYRRLNEVTKSDTYPLP-RIDDLLQSTKKNCYMTTIDL 281
           L+ P SN N  FC +  R   VT    YP    +++ L  T   C+   I++
Sbjct: 5   LLNPSSNYNASFCYNVSRGTFVTVECEYPFAYYVENALYRTVFGCFFHLIEV 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,132,408
Number of Sequences: 27780
Number of extensions: 310533
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)