Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e01
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28230.1 68417.m04045 expressed protein                             31   0.67 
At3g52550.1 68416.m05782 hypothetical protein                          30   1.2  
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    29   2.7  
At1g05950.1 68414.m00624 expressed protein                             29   3.6  
At5g62730.1 68418.m07875 proton-dependent oligopeptide transport...    28   4.7  
At4g33600.1 68417.m04773 expressed protein                             28   4.7  
At1g78500.1 68414.m09150 pentacyclic triterpene synthase, putati...    28   4.7  
At5g03250.1 68418.m00274 phototropic-responsive NPH3 family prot...    28   6.2  
At3g46650.1 68416.m05064 UDP-glucoronosyl/UDP-glucosyl transfera...    28   6.2  
At3g18330.1 68416.m02332 F-box family protein contains Pfam PF00...    28   6.2  
At2g26300.1 68415.m03156 guanine nucleotide binding protein (G-p...    28   6.2  
At1g78200.2 68414.m09113 protein phosphatase 2C, putative / PP2C...    28   6.2  
At1g78200.1 68414.m09112 protein phosphatase 2C, putative / PP2C...    28   6.2  
At1g25380.1 68414.m03150 mitochondrial substrate carrier family ...    27   8.2  
At1g12220.1 68414.m01414 disease resistance protein RPS5 (CC-NBS...    27   8.2  

>At4g28230.1 68417.m04045 expressed protein 
          Length = 402

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 23/61 (37%), Positives = 33/61 (54%)
 Frame = -2

Query: 499 PSEIINKSSR*ASTVTSFKAAQERRRSISLWKVAGAFFKPNGILLKR*VPRGQTKAVLSL 320
           P+EI N + + + TVT  ++AQ RR+S         FFK  GI   +   RG+ +  LSL
Sbjct: 171 PAEIFNSAKK-SETVTPLQSAQNRRKS--------CFFKLPGIEEGQVTTRGKGRTSLSL 221

Query: 319 S 317
           S
Sbjct: 222 S 222


>At3g52550.1 68416.m05782 hypothetical protein
          Length = 178

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +3

Query: 15  VPPYRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEV 194
           + PY     ++E  K E EK   ++  EE E     P +MIP S+ ++   +D   + EV
Sbjct: 44  INPYDAEDEEEEEDKEEKEKEKRENEKEEEEEENSLPGIMIPTSSSSISSTID--TIEEV 101

Query: 195 TKSDT 209
            ++++
Sbjct: 102 PETES 106


>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
 Frame = +3

Query: 171 DYRRLNEVTKSDTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRD--KTAFVC 344
           DY R +E+    + P       L   +   Y      R S +  + R + R   +  FV 
Sbjct: 594 DYDRRDELPPPRSRPAVSYSSRLSPERHLSYRDDYPPRGSGYSDLPRSSSRSEIRRPFVD 653

Query: 345 PLGTYRFKRMPFGLKNAPATFQRLIDRLRSCAALKDV 455
            L + RF+R P   +  P  ++ L    R  AAL D+
Sbjct: 654 DLYSPRFERPPSYSEGRPRAYEPLPGSKRPYAALDDL 690


>At1g05950.1 68414.m00624 expressed protein
          Length = 590

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 213 PLPRIDDLL-QSTKKNCYMTTIDLRSSYWQVMVREADRDKTA 335
           P+ R+  LL  S KK+CY+    +    W ++ +  +++K A
Sbjct: 137 PIRRVAVLLVDSEKKSCYLQHSSITQGVWSLLEKPIEKEKAA 178


>At5g62730.1 68418.m07875 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 589

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -1

Query: 245 TLEKIINAWEWVSIRFGYFI*APVIHAESYITIGLRYH 132
           T+  +  +  W S+  GY+  + ++ A +++T GL +H
Sbjct: 507 TMRSLATSLSWASLAMGYYFSSVLVSAVNFVT-GLNHH 543


>At4g33600.1 68417.m04773 expressed protein 
          Length = 453

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -3

Query: 282 EGLLWSCNNSSSYSGEDHQCVGVGKYPIWLLHLSACNPRRILHYHW 145
           EGL +   N   Y    H    +  +  W L     NP+R + YHW
Sbjct: 164 EGLTFVSYNHYDYGNMWHGLSAMVPFVAWSLRHQCENPQRWVLYHW 209


>At1g78500.1 68414.m09150 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase (04C11)
           [gi:6650208] [PMID:11247608]; similar to beta-Amyrin
           Synthase GI:3688600 from [Panax ginseng]
          Length = 767

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 444 LKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLHVNREKCTFAKERVRYLGHVI 623
           L+ ++ + +++D ++  E  +     + A+ R L EF  H   E   F K  V+Y+    
Sbjct: 550 LEWLSPVEFMEDTIVEHEYVECTGSAIVALARFLKEFPEHRREEVEKFIKNAVKYIESFQ 609

Query: 624 TPDG 635
            PDG
Sbjct: 610 MPDG 613


>At5g03250.1 68418.m00274 phototropic-responsive NPH3 family protein
           contains some similarity to root phototropism RPT2
           [Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
           transducer of phototropic response PMID:10662859
          Length = 592

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 465 AYLDDLLIISEGFQQHLQDLEAVFRRLSEF 554
           A L DLLI + G+ + L D+E V R + +F
Sbjct: 338 AALVDLLIPNMGYSETLYDVECVLRMIEQF 367


>At3g46650.1 68416.m05064 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 438

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 267 SCNNSSSYSGEDHQCVGVGKYPIWLLHLSACNPRRIL 157
           SC  SSS S  + Q VG+  YP+  LH++  +P  +L
Sbjct: 197 SCLESSSLSWLE-QKVGISVYPLGPLHMTDSSPSSLL 232


>At3g18330.1 68416.m02332 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 376

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 640 DTPSGVMTWPR*RTLSLAKVHFSLFT*SLNSDRRLKTASRSCRCCWNPSEIINKSSR 470
           DT  G ++W +   L L++   +LFT +   D   K     C   W   E  NKS++
Sbjct: 284 DTTEGAVSWTKVLELDLSRELHALFTSNFLVDEEKKVF--ICCVSWKEDEDENKSNK 338


>At2g26300.1 68415.m03156 guanine nucleotide binding protein
           (G-protein) alpha-1 subunit / GP-alpha-1 (GPA1)
           identical to SP|P18064 Guanine nucleotide-binding
           protein alpha-1 subunit (GP-alpha-1) {Arabidopsis
           thaliana}
          Length = 383

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +3

Query: 78  LADDIIEECESAWCSPALMIPKSNGN---VRFCVDYRRLNEVTKSDTYPLPRIDDLL 239
           L  DI E  E+ W  PA+    + GN   V  C  Y   N    SD   +P  +D+L
Sbjct: 131 LTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVL 187


>At1g78200.2 68414.m09113 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase 2C GB:CAA72341
           [Medicago sativa]; contains Pfam profile: PF00481
           Protein phosphatase 2C
          Length = 283

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 426 LRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAV 533
           L S   +KDVT+ ++ D L++ S+G  + + + EAV
Sbjct: 211 LNSEPEIKDVTIDSHTDFLILASDGISKVMSNQEAV 246


>At1g78200.1 68414.m09112 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase 2C GB:CAA72341
           [Medicago sativa]; contains Pfam profile: PF00481
           Protein phosphatase 2C
          Length = 283

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 426 LRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAV 533
           L S   +KDVT+ ++ D L++ S+G  + + + EAV
Sbjct: 211 LNSEPEIKDVTIDSHTDFLILASDGISKVMSNQEAV 246


>At1g25380.1 68414.m03150 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 363

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 336 FVCPLGTYRFKRMPFGLKNAPATFQR 413
           FVCPL   + +    GL  APA+ QR
Sbjct: 34  FVCPLDVIKTRLQVLGLPEAPASGQR 59


>At1g12220.1 68414.m01414 disease resistance protein RPS5
           (CC-NBS-LRR class) / resistance to Pseudomonas syringae
           protein 5 (CC-NBS-LRR class) domain signature CC-NBS-LRR
           exists, suggestive of a disease resistance protein.
           Identical to RPS5 (resistance to Pseudomonas syringae
           protein 5)(gi:3309620)
          Length = 889

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 426 LRSCAALKDVTVLAYLDDLLIISEGFQQHLQDL 524
           +  C  LKD+T L +  +L  +  GF + ++D+
Sbjct: 752 IAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDI 784


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,348,782
Number of Sequences: 28952
Number of extensions: 291950
Number of successful extensions: 758
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)