Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d24
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    33   0.19 
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    33   0.19 
At4g34140.1 68417.m04845 D111/G-patch domain-containing protein ...    31   0.99 
At1g16140.1 68414.m01934 wall-associated kinase, putative contai...    28   7.0  
At1g18670.1 68414.m02330 protein kinase family protein contains ...    27   9.2  

>At5g54650.2 68418.m06805 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 264 QYMEYASVAGPNYDDFDLIKQRVVPHTLCGAGSNDRNSVFG-DKSGMDEPLNNWKPDTLY 440
           ++ME  S A   + D D +K+ V    LC  GS D   +FG + + + + L +   +   
Sbjct: 56  EHMEETSWAQRCWQDSDCVKEAVAEFNLCFPGSKDSRELFGLNHTNLKQTLLDCIQEKGK 115

Query: 441 LNLYQPVY 464
           LN + P Y
Sbjct: 116 LNGHNPKY 123


>At5g54650.1 68418.m06804 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 264 QYMEYASVAGPNYDDFDLIKQRVVPHTLCGAGSNDRNSVFG-DKSGMDEPLNNWKPDTLY 440
           ++ME  S A   + D D +K+ V    LC  GS D   +FG + + + + L +   +   
Sbjct: 56  EHMEETSWAQRCWQDSDCVKEAVAEFNLCFPGSKDSRELFGLNHTNLKQTLLDCIQEKGK 115

Query: 441 LNLYQPVY 464
           LN + P Y
Sbjct: 116 LNGHNPKY 123


>At4g34140.1 68417.m04845 D111/G-patch domain-containing protein
           contains Pfam PF01585: G-patch domain
          Length = 418

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 75  GYLSLPTARQYKCFKDGNFYWPHNGDNIP 161
           G+   P A  Y C KDG +Y   NG+ +P
Sbjct: 39  GFYHDPNAGWYYCSKDGRYYKHENGEYVP 67


>At1g16140.1 68414.m01934 wall-associated kinase, putative contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 690

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 133 IGPTMAITFPTPRAAMLTNQSIINIEL 213
           +G  +++T P P  A L N+ ++NI L
Sbjct: 41  VGTRLSVTAPLPGPAKLINREVVNISL 67


>At1g18670.1 68414.m02330 protein kinase family protein contains
           Protein kinases ATP-binding region signature,
           PROSITE:PS00107 and Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 662

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 140 GPIKISIFKTFILTGRRQGQIAVRAHCRRVN 48
           GP+++S+   F    RR+  I VR+H R ++
Sbjct: 536 GPLQVSVSSGFAWAKRRKDDICVRSHNRSLS 566


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,736,217
Number of Sequences: 28952
Number of extensions: 349895
Number of successful extensions: 791
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)