Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d23
         (416 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein ...   200   2e-53
AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein p...    24   1.9  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   5.9  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   5.9  
U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.             22   7.8  

>AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein S26
           protein.
          Length = 114

 Score =  200 bits (488), Expect = 2e-53
 Identities = 92/111 (82%), Positives = 100/111 (90%)
 Frame = +1

Query: 40  KRRNGGRAKHGCGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQ 219
           +RRNGGR KH  GHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+DASVY  + 
Sbjct: 3   ERRNGGRCKHNRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYV 62

Query: 220 LPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 372
           LPKLYAKLHYCVSCAIHSKVVRNRSK+ RRIRTPP+ +FP+DM+R Q  QR
Sbjct: 63  LPKLYAKLHYCVSCAIHSKVVRNRSKETRRIRTPPQRSFPKDMNRQQNAQR 113


>AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein
           protein.
          Length = 298

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 13  GSEVRNMTRKRRNGGRAKHGCGHVKAVRCTNCARCV 120
           G  VR      R+    + G  + KAV CTN  +C+
Sbjct: 243 GHMVRECQGTNRSSLCIRCGAANHKAVNCTNDVKCL 278


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 270 QQSCQEQIEERQKNPYSSQ 326
           QQ  Q+Q ++RQ+ P S Q
Sbjct: 254 QQLSQQQQQQRQRQPSSQQ 272


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 16/75 (21%), Positives = 32/75 (42%)
 Frame = +1

Query: 106  CARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVR 285
            CA  V K + + ++ IR  + +    DI  ASV+   +         Y +   +   +  
Sbjct: 808  CATTVRKGRKLYQYTIRLPINSPWKEDILIASVFNECRPDAETVAYLYHIRMELICPIPE 867

Query: 286  NRSKKDRRIRTPPKS 330
             ++ + R+I  P +S
Sbjct: 868  EQNTRGRKIYAPEES 882


>U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.
          Length = 278

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 302 TEESVLLPRVTSLGTCHVHRQ 364
           T+ S+  PR+T   T HV+ +
Sbjct: 176 TDGSIFPPRITKNSTLHVYEK 196


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 393,393
Number of Sequences: 2352
Number of extensions: 7599
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 34205040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)